RNA id: XM_034314645.1


Basic Information

Item Value
RNA id XM_034314645.1
length 3903
RNA type mRNA
GC content 0.51
exon number 15
gene id arhgef4
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20637584 ~ 20663819 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTACCAATGGGTTAGGAAATGATGAATCCGGAAAGCACCTTTTTGTCCAGATTCTCTTCAGTACAAAAGTTACCCTTTTATTGATGTTAGCATTGGTACACTATCAGATTTGGAGCCCATTATGGAGTCAGAACACCCTCAGGAGAGCTCAGACAGTTCGGAGGGAGAACAGAAAGATGGTACATCATCTGTGAATGAGAACGAATGCAGCCCTTTACAAAGGGATGAAAATGATGCACTATACAATGTCAGGTCTATGAAAGGATATTTTGATAAACCAGAAGATGTAGACAGCACTACTCGTCTGACAAATGGGTATGATGGTAATGAGGATATTCCCAATTCTGCATCTCCAGATCAAGACTTTATCACCACAAACAGTGAAGAAGTTGATGATCTCAGTCACGGCCCAAGGGGAAGCAGCTCCAACTCCCCTGGCAGCAACCAAAACTCATTAAAGAACAAGGAGACCAAGAGCATGTCTGCAGGGAAAAGCTCAAGGTTCTCTAGGTTCACAAGAATCCCCTCCTTCCGCAAAAGCAAGAGAGAGTCCAAGGATGGAAACAAGGTTGAACCTGAGACAAAACTATCTCCTGAGGTTGGAGAGGAGAGAAATCAGACACCTAATCATAATCCTACTACAGATCACTTGACAAACTATGAGGATCAATCTAGTGATGATGTCTTTGGGAAAGCCCTTGGTGTAACTTGGAATGGACAATCCGGATCCACGTCCAGCTCCAAGAATATGCAACAACATAACAAATACAGTGAGCGAGTGCAAATTAAACCTGTACTTGATCCCCAAAAGAAGAGCAAGAGCAGCGATAACTTCCGCATGAAGCTTGCTCTGGCTCAGAGGTCTCTGTCGAGCTTCTTTGAGATCAGAACTGGTGATAAAGACAACCAACAGGATTCCAACATGCTGAGCCAGGATACAAAATCCAAGCAGCCTTGGAAGAAGATGAAAATGACTAAGGAGGCTGAGATGCTAAAGAGAACTCTGTCTCTTCCTGGGCCAAGTGGTGCCAAGTCCAGACGTCGCCTCCAGAGTGACTTTGTGTCTGGGTTAACTGAGGACTGTCCAGATCTTCAGGGATTCCAGAGCTCCAAGGAGGATTTGAAAAGCACATCACACCCTGACGCATCAGTGTCTGGACCTGAGGCGGAGCCTGCTGAGAGAAAAACACTATCTAAGTGTTTTGAGTCTGTCCAAAGTTATGAGAACATCTCAGAGACACTCATACACCCTACTGTTTTTGCACTTGCTAATCAGCTATCTCCATCCTGGACAAGATCCCTGGGTTCCTTTGAAGGACTTGATACGCCAACTAGGCCAATGACTCCCAAACCACAAAATCCTGGGGTTTGGAGTCACAGAAGCAGCTTCCGTTACCCCTCAAAATCCGTAGCCACCTCCTTGTGCTCGCTGGGTGAGGGTTCGAGTTTGGAGGGACTGTCAGATCGTTCACAGAGGCGGACCGAGCAAAGAGAAGCACGAATTGCACCGGCTCAGTCCTTTGATTCTGAGTACTTACTTGAAGACAGCAACTCGGACAACCAATCTCAAACCAGCCTGGTGTCCACCAACTCAGCCACTGAGTCTGAGCCTTCACAGGATGTCAGTAAATCATCTCTCCAGTCATCTTCCTCGGTGCTCCGTGTCAGAAGAAGCGATCAGCGTGCGGTCCGACCCAGACCTCTTTCTGACCTCTGCAGCTGGAGTTTACCTCTCCAGGAAATCGGAGAAACGGTGGTTGATCCGATTCAGGAGCAGAACGTCACAGAAAATTGGAAGGCTAAGGCACAGAAGAGATCGTGCTCAGATGAGCTGCTCGGGGAGTTCCAGAAGATGCAgaagatgaaggtgatgatgcaGAGGAGCCTTGGGACGCTGAGCACAACGTCTGAGGAACAGCAGAAAGTGAGGATGAGACTGCCCTTCACTTCTTCACAGCAGTTGTCCTCCATGTCTTTTAAAGATCACTTCTTCTCCCAGAGCACTCCGACTGGACTCGACTGTCTCCACTGGCCACGCCCAGTTTCATTCTCAGaGTCGTGTCTCATTCGACCTTCAGAGCACACGCTCAGGCAGCCGGCCGCTCTCGCGTTGGTGATCACCGATGGACCTCAGGATAAATCGGGTCTGGGTGATGAGGTGGGCAGTGAAGACGAGCTGTACAACGACTTCCACATTTCTGCCAATCGCTTAGGAGGAGGAGAACAACTCGCTATTAATGAGCTGATCAGCGATGGCAGCGTGTGCGCCGAGGCTTTGTGGGATCACGTCACCATGGACGACCAGGAGCTCGGCTTCAAGGCCGGAGACGTCATCGAGGTGGTGGACGCCACCAATAAAGAGTGGTGGTGGGGACGAGTGCAGGAGAGCGAGGGATGGTTCCCCGCCAGCTTCGTCCGGctgcgTGTGAATCAGGACGAGCCGCTGGAGGATGATGTAGTCCAGGGCGCGGTGGAGAGCGGGGGTGCGGGGGTGGGCGGGTCGTGTGGGCCCGGGTTACCGTGTAAAGAGCAGATGAGGGCGAATGTGATTAACGAGATCATGAGCACGGAGAGAGACTACATCAAACACCTGAAGGACATCTGTGAGggCTACATTAAACAGTGCCGTAAACGGACCGACATGTTCACAGAGGAGCAGCTCAGGACCATCTTCGGCAACATCGACGAACTTTATCGCTTCCAAAAGAAATTTCTCAAAGCGCTGgagaaaaaatacaacaaagagCAACCACACCTGAGCGAGATCGGCTCCTGCTTCCTGGAGAACCAAACGGATTTTCAGATTTACTCGGAGTACTGTAACAATCACCCCAACGCCTGCGTCCAGCTCTCCAagctgatgaagatgaagaagtaCGTGTTTTTCTTCGAGGCGTGTCGCCTGCTGCAGAAGATGATCGACATCTCGCTCGACGGCTTTCTGCTCACACCTGTGCAGAAGATCTGCAAATATCCACTGCAGCTCGCCGAGCTCCTCAAATACACCAACCCTCAGCACCGAGATTATAAAGACGTGGAAGCTGCTTTAAACGCGATGAAGAACGTGGCGCGGCTGATCAACGAGAGGAAACGCCGTCTGGAGAATATCGATAAAATCGCTCAGTGGCAGAGCTCCATCGAGGACTGGGAGGGCGAGGACGTTCTGAGTCGGAGCTCGGATCTGATTTTCTCAGGAGATTTAACCAAAATCTCACAGCCTCAGGCCAAAGGTCAACAGCGCATGTTCTTCCTGTTTGATCATCAGCTGGTCTTCTGCAAAAAGGATCTGCTCCGGAGggacattttatattataaaggACGCCTGGACATGGACCAGATGGAGGTGGTGGATGTAGAAGACGGAAAAGATAAAGATCTGAACGTGACGGTGAAGAACGCGCTGAAGTTAATATCTCCAGACGGAGCAGAGATTCATCTCCTGTGTGCTAAAAAACCCGAGCTGAAGCAGCGCTGGCTCCGAGCCTTCGCCGACGAGAGACAGCAGGTCCAACACGACCGAGACACGGGATTTTCCATCACAGACGTGCAGAAGAAACAGGCCATGCAGAACGTGTCGAAAAATCCTCCAGCTGGAAAACCCAAAGCGTTACACCACCTGCTGGCTCTTAAAGCTCCACTTCTACGCTCCAAAAGCTCCAAGTGCCTTCATTACCCAGAATCCCCTGGGCCTGCCTTCTCCTCCTCCCCCCTTCCTGAAGTTATAGCGCCCCCTGGTGTCCTGCGCAGGGCCATTTCCTGGGTCTCCTCTCAGAGTACAGACCTGCTCCGATAGACTAGGGcggTGACTCGTCCGTATTACGACCTGCTGTTGCGTCAGAAGCCGTCGGCGTTGCCCCAGCAGGTCATCATGCTCGCCGAACCCAAGCGCAGAAACTTCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383205 lncRNA upstream 33392 20528505 ~ 20604192 (+) True G323553
XR_004580291.1 lncRNA upstream 159239 20476972 ~ 20478345 (+) True LOC117599946
TU383194 lncRNA upstream 159239 20476996 ~ 20478345 (+) False LOC117599946
TU383195 lncRNA upstream 159310 20476996 ~ 20478274 (+) False LOC117599946
TU383184 lncRNA upstream 186692 20449973 ~ 20450892 (+) True G323536
TU383238 lncRNA downstream 6828 20669685 ~ 20670160 (+) True G323576
TU383242 lncRNA downstream 8871 20671728 ~ 20672454 (+) True G323577
TU383246 lncRNA downstream 10077 20672934 ~ 20705194 (+) True G323578
TU383279 lncRNA downstream 270375 20933232 ~ 20946079 (+) True G323603
TU383316 lncRNA downstream 304656 20967513 ~ 21024078 (+) True G323624
XM_026911357.2 mRNA upstream 35053 20592866 ~ 20602531 (+) True amer3
XM_034297733.1 mRNA upstream 48126 20572562 ~ 20589458 (+) True atr
XM_034297732.1 mRNA upstream 65246 20532000 ~ 20572338 (+) True spef2
XM_034297731.1 mRNA upstream 111662 20505684 ~ 20525922 (+) True lifra
XM_034297730.1 mRNA upstream 160620 20469525 ~ 20476964 (+) True zgc:110269
XM_034297735.1 mRNA downstream 144770 20807627 ~ 20883606 (+) True col11a1b
XM_026911369.2 mRNA downstream 223403 20886260 ~ 20892997 (+) True tecrl2b
XM_034314548.1 mRNA downstream 317892 20980749 ~ 20991604 (+) True LOC113524959
XM_034314550.1 mRNA downstream 317892 20980749 ~ 20991604 (+) False LOC113524959
XM_034314549.1 mRNA downstream 317892 20980749 ~ 20991602 (+) False LOC113524959
TU383181 other upstream 197023 20438702 ~ 20440561 (+) True G323534
XR_004580282.1 other upstream 1766224 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 2214953 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 2410351 18226562 ~ 18227233 (+) False si:ch211-162e15.3
trnap-ugg_22 other downstream 252547 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 358332 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 472262 21135119 ~ 21136847 (+) False G323615
trnap-ugg_23 other downstream 479420 21142277 ~ 21142348 (+) True trnap-ugg_23
trnai-aau_18 other downstream 484093 21146950 ~ 21147023 (+) True trnai-aau_18

Expression Profile