RNA id: XM_034314649.1


Basic Information

Item Value
RNA id XM_034314649.1
length 2040
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC117599965
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16952977 ~ 16956560 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATAGAGCTGAATTTGAAACCTTGCACACAAATTCAGGCCATGGGATACAATTTCAATCATTCAACTACAAAACTTCATGTACAAATTCAAACATAAAAATTCctatttgtaaaatgtaaaattcagaTTGTAGCAGCACTTTTCTCATTGCGTAAGCAGAGAGGTGATGTTTGGTATTCATCTGATTCCTAATTTCATATTCTCatcatgctttttttgtctgtttgtgttcAGAAATGCAAGCCCCTTTTCGTTCCTGCTGATCCTGATGAGCTGCCCGGTGTTGACGTCCATCCATACTTCTCACTGATGGTCCTGAGGAGAGCCATCACAGAGCTGAGAGAGCGAGTGAACGATGTGTGCGACAGGGAGTTAGCCAGGATCTCGGATTTAATTAAAGATGAGCAGAGTCTGTCGGCTGAAAGCACTTCCCCTGTCCCTGTATGTCCTGAAATAGtttctccTGTGAAAAGTGTGGACCAAACACAAAGCGAGCCAAAGACCAGAGCCGACTTTTTACAGTTCTGCTGTGAGGTGACGTTGGACCCAAACACTGCCAACTCCTACCTCTGCCTTTCAGAGGGGAACCGGAAGGTCAGCACCTGCTACGAGTCCCAGTACTATCCGGAACATCTGGAGAGATTCAGTGGCTGGGCTCAGGTGCTGGCCAGGGAGGCCGTCTCCACGcgctgttactgggaggtggagtggagCGGCAGTGGTAGGATCGGTATCGGAGTTTCTTACAAAGGGATTAACAGGCATGCTGGGAGCACTGACGGAAAACTGGGCTGCAATTCCAAATCATGGATTTTGAACCTTTCCGATGGCCATTGTACATTTCAGCACAATAAAACCAAGCTGGAGATCCCATCTCCTATTTCAGCCAGGATAGGAGTGTATGTAGACCACAAGGCAGGGATTCTAGCCTTCTATTGCATCTCTCCGAGAAGGGACTCTATGACCTTGCTGCACAGGATACAGACGACTTTCTCCCAGCCTCTGTACCCCGGATTTTGGCTTGGCCTTGGTTCCACACTCAAACTGTGCTCCATACTTAACTTCACAGCTTAGAGAAGGGGGAATCCACAAAGCATCTTATGCTAGCAAGTGGACTTGTGGTACCTTTACTATTTAAAACCAAATGTGTTCAGATTTACATAGGAGACTGGTCTGGCCAGGTTGTATTCCTGAACTGACCCACAGGCTAGAAAACCAAGAAGTgaataaaagtattatttgaAGGTAATCAGTAAGCTTAGGTAGCTAACTGATGTAAACATGACAGCTGTTTAAACTTGGCAACTTGCATGAATTTTGCAAGATCTGACAGCATGTTTACCAAGTAGCCATAATCAAAGCCATCCTAGAAGAAATCCCATTGGTGAAAATTGATGACAGATATAAGGTGCAGTTAAAGATATTAGGTGCAATTAACATCAGATTTTGGTCCAAATCTAAATTGAAAAACATCagatttaatgtgatttttgttGTTCACATGGCCATAAAAAGGAaatctatataatatatgaaGGAGAAAAGCCTCAGATTTGGGTGAGGcatgaaactaaaaaaaattatcagaCACCAATATGAAAAGGCTCATGTCTTCAAGGACAAACATCATGCCACTCATTCAACGAGCTTCATCAGTTGTATTAAGATCCGACACCATGTTTACCACATAGTCATAACCAAGGCCATCTGGAATTCCCATCGGCGCAAATTGATGACAAAGATTAGATGCAAATGAATGGACATGAAAGTCAATACTTTTGACCTGATCATTCATCTTGAAGTTGCATTGCCATGCATCAGATTTCAGGAACAGCTGTGGTCCAAATCAGAACTGATTTTCTTTCACACAGtcataaaaaaaggaaatctgtATCACATTTGTGGGGGGAAACAACTCAGATTTCAGTGAAGTGTGAAATCATAATAAATATCTAACTAACCTTAACAGGCTAATCTCTTTAAGAATAAACGTCTTTTTGCCTTGAAGATGTTTTGCCACgccagaggtgccaacattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380843 lncRNA upstream 59953 16892813 ~ 16893024 (+) True G321602
TU380827 lncRNA upstream 93399 16792714 ~ 16859578 (+) True G321591
TU380813 lncRNA upstream 160539 16792128 ~ 16792438 (+) False LOC117595733
TU380818 lncRNA upstream 163370 16789186 ~ 16789607 (+) True G321585
TU380826 lncRNA upstream 172775 16779865 ~ 16780202 (+) False LOC117599973
TU380963 lncRNA downstream 2185 16958745 ~ 16960734 (+) True G321704
TU381407 lncRNA downstream 524825 17481385 ~ 17482562 (+) False fuz
TU381408 lncRNA downstream 525353 17481913 ~ 17483644 (+) False fuz
XR_004580280.1 lncRNA downstream 569011 17525571 ~ 17537160 (+) True LOC117599934
TU381461 lncRNA downstream 632512 17589072 ~ 17666213 (+) False npc1
XM_034314648.1 mRNA upstream 5631 16941842 ~ 16947346 (+) True ftr67
XM_026946367.2 mRNA upstream 14303 16935805 ~ 16938674 (+) True si:ch73-52e5.2
XM_026946365.2 mRNA upstream 15489 16931308 ~ 16937488 (+) False them6
XM_026946366.2 mRNA upstream 15489 16931312 ~ 16937488 (+) True them6
XM_034314719.1 mRNA upstream 70219 16873882 ~ 16882758 (+) True LOC113546333
XM_026946355.2 mRNA downstream 19363 16975923 ~ 16991112 (+) True ghrhra
XM_026946138.2 mRNA downstream 109641 17066201 ~ 17071957 (+) False xcr1b.1
XM_026946137.2 mRNA downstream 112757 17069317 ~ 17071957 (+) True xcr1b.1
XM_026946338.2 mRNA downstream 119170 17075730 ~ 17081658 (+) True xcr1b.2
XM_026946359.2 mRNA downstream 282366 17238926 ~ 17293166 (+) True cntnap2b
TU380835 other upstream 100553 16851445 ~ 16852424 (+) False LOC117599970
trnag-gcc_20 other upstream 765936 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 767410 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 768835 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 820613 16131335 ~ 16132364 (+) True G321257
XR_004580277.1 other downstream 522274 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other downstream 522274 17478834 ~ 17483677 (+) False fuz
XR_003404718.2 other downstream 614089 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 1270002 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other downstream 1270002 18226562 ~ 18227136 (+) False si:ch211-162e15.3

Expression Profile