RNA id: XM_034314672.1


Basic Information

Item Value
RNA id XM_034314672.1
length 9527
RNA type mRNA
GC content 0.50
exon number 39
gene id svilb
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 12844080 ~ 12905436 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

accttattgTACTTTTTACATTGCAACATGTTTCGGAACCCATGGATTACTAACTACCTCGGCCATGTCGCACAGTACAGCCAAGGGCTTGGTGGTGAGTCAGCAGCTAAAATCTGCAACGCTACAATACTACAGAAAGAAGCACCAAGctttacaagAGAATTTTCCActgaatacaaaaacacacacactgtcacagagGACAAAATCCTTGCTGTGCTGCCCAAAGTTTCAGAGTTACGAAAGCATTTTGAAACTGATATCACAAgtgataataaaatgaaaagAAAAGAGAGGATTGCACGAAGGCTGGAGGGTATAGAGACAGATGTGCCATCTGCTCTGGCTACAAGCATGCAATACACACCCGGCCAGGTGACCAATCGGCTACTGGAGGAGGACACGCCACGGTATACACGTGCTTCAGACTCAAGTGAACCAGTGAGGCGCTACAGTCGTGATGAGCTGGACAACACAGAGAGGCAATCAAGGGCACAAACATGGCCCAATCCACAAGTTCCTGTGCATCCTGAGCAGGCTTCCAATCCTGAAAGCACTGACGTGACAAGCCTCAGCTCCAAAGCTGAACGAATAGCTCGCTACAAAGCCGAGCGCCGGCGCCAGTTATCAGAACGTTATGGGATCCTGCTTGACCAGGAGCTGGATACAGATTACACGCCACGGCACACACGAGCCCGCAGAGAGTCGCTGGACAAGCAAGCTTTGCCTGATGGGGGGCATGGGCAGAAACAGGAACAGTGGAGAGAGGAGACGGGGCATGACAGTAGCGCCAACAGGTCAAGATACAGCAGCTCAGGCGTTGGCCGGGTTTCCATACCAACTGATGATTCTGCCTCTCGCACACACCGGGAAAGAAGAAACACTTTTAGTTCTCGAGACAAGAGATTGGATGCAGAGCAAGAGAGCGAAAGGGTCAACCTGGAGAACTACCGGAGAACACCAGACAGCAACCGCCGATCATACCCACAAGAAGCTCCACCCTCTGTGGAACAGGGGTCAGCCCAACAGGCCAGAGGTGTTGCTGCAGTGCCTAGATCCCCCCGAGCAGCACGCCGTGCCTCGTTGCCCTCTACGCGCCATGGAATCTCCCCAGGAGACCTGTTCATTGAGCAGCAGGCACAAAACATCCTCAGCCGACAGGGTGAGTGGTCTCTTCAGAAAGACTTGGATGGTGAAACAAACTCGCATATCAACTGGCCCTCCAGAAtacgagggagagagagacgggcaAGGGAAGACAGCTTAGGACGGGCATCTGATTCAGGATCAGATGCAACCTCGGTCCGACGTCTCCCTGTCGAAACTCCTTCACATTTAGCCCCTAACTCTGAGTCTACAATCCACCTACAAACATGGGCTACAGAACCCCTAGGCCAACAGCAGAATTTGAATACAGAACCTTCCCATTACTATCGAGCACACAGTGCCGAACCACCACGATACCAACGCGCACAGAGTACAGAATCAACTCGCCTTCGACATTTACACTCAGGTGAACCTCAGTGTGCACCAAATGTAGAACATCTAAACTATGATCAGAGGCTTCAGGGGCACCCGAACAATATGAGTTGCCAGCCGGATTATACACAACTTCCACTCTACTACAGGGACATCCAACAGCCAACTCAAATATGCAGAATTCCCCCACAGACTCATTCTAGAGACAGAGACTTTCAACAGTTATTTCCTGAGATTAGAAATGCTCCACAACCTGaactaaaatatatacacacccaTCAACCAATGCTTGTGGGCAATGCTTCTCACCACCAACCTCTGCTATATAAGGTTGGACATGAGTCTCCATCATTTGGACAGAATCAGCAAATTGCTTCTGGATACAGTCACGGTCAGCCTCTACCTTATGGTCCCATTGAAGATCTGCATCCTGCCTATGGCCATACTCCACACCATGGTCCCTCCTACTGGCCTAGCCAGCCACCTGCTCCATTGAATGGGAATACTGCATGTTCTTCACCCAGGCCTTCTAAAACACATGGGCCTCCAGATCATCATGGCCATGCAGATATACCTAGGTTGACACCAATTGGTAGGGAAGGTGTAGAAACCAGTCAAAGGGCTAGTGCTGATCATATTCCGCTTTTCCAAAGGGAGGGTAGATCAGCTTCTAGGACTGACCAACCATCAGAATGCTTGCTGAGGAGCAGAAAAGCTGTGTTGCCTTCTGAAATCCGCCGCCGGGAGAGAAGTGTAGATGACACCATGCAGAGACACACTGAGGAAGTTGTGGAGGGTAGGAGAAGCAGGAGAATCATCCAGTCAGAAGAGATTGAGCAAGGAGGTGGAGTGAGTGTTAGCCAATTAGATGAGGGGGCAGATAAAGGCAGAGGCAAGGTTGGCAACTTCGAGATGAGAGAAGAGCATGATGAAAGGAGAGTCAGCCCATTAGGGGAGGAAGGAAGTAAAGGAGAAGACAGGACCAGCCACATGCAGAACAGGGCAGGCCAAGGTGATGGGAAAATTAGTGAGTCTCAAGAAAGTGCAGGGCTGGGCAGCAAAAAGAGAATGCAGGGAGAAAGTGTTGGGTGTGAAAAGATGGAAGAGTGGTGGGATGATGGTCAAATAAGCAGGTTAGGTCAAGTTCAGCATCATGGTGTAGGACAATTTGATGGGATTATAGGGAAGTCAGAGGAACAGTTACagaacattaaacacattaaagttCCATCAAGGCAGGTTGAAAACTGGGTGAGCAAATCGGATGTACCACAAGGCCTTGACAAAAGGCTTACTCAATATGAGATAAAAGATGGACAAAGTGGAGGGAGAATTGCATCATTTGATAAGGTGGAGCTGAATGAAAACAGGAATGTAAAGGTTGATGTAGAAAATGGTGAAGGTCAAAAGATGGTCCAGAAAGAGACATTAGAATTGCAATGTAGACAAAGGAGGATCAGCCAGCCAGAGGAAGGTGAGGAACATCTCAGACGCAGAAGGCTAAGCCAATCCGAAGATGATAGGAAAGGACGTAGGGTGCGTAGGATCAGCCAGTCAGGTAATTGGGATGGCCAAGATCAAATTGGCCAAACAGGTGGTCAAATGGAGGGTGATAGACATAAGAAGATAAATCTGGACATGCCAGAAGCTATGGATACCACATCCACACAACAGGAGGGCAATTACCCATCTTTGCACCATAGACCAGATGAAGTAGGCTGTTACTTACAGAGCGGTTCCTCCCTCCCTCAGGCTCGCCACAGAAGAAGCAGGGATGAACTCAAGCCAAAAGTCCGGACTCGCTCTATGTCAGATATTGGAGTGGGTCAGCGGTCTGTAGCAGTTCGTTGTCTTGAGCGTGCTGCAAGTCGAGAATCCATTATGGCAACAGGGATGGGACAGAATGCCAGGGACACAGGAACCACCAATGGTGAAGTAGGGGCTTTGGATACAAGAGTTTCTGTGGCAAAGCTCAGGCATTCCTATCTGGAGAATGCCTCAGGACGCAGGCCTGAACTAAGTGAGCCTAAGATAGACACAGCTGTGATGGAGGCTGATCCAGCAGAGGTTGCTGACCAAGAAAAGGGGCAACGCCGACCTAGAAGGTATATCAACCCTGGTGATGATCGCAAGGCCTCTGAAAGGTTCAGAACTCAGCCAGTCACATCAGCTGAAAGGCTACAGTCTGATAGGACTCTGGAGCTACATAAGGCAGAAGTGGATGAGGAAAAGTTGGACGAACGAGCAAAGATGAGTGTAGCAGCCAAGAGGTCCCTCTTCAGGGAGCTTGAGAAGACTGCAGAAAGTGGTGTTCCCAAACCTCGGTCCCGTAATGCAGCAGTGGAACGGAGACTCAGGCGCACACAGGACCGCGCCAGAACCCAGCCTGTTACCACAGAGGAAGTGGTCATTGCTGCAACTTCTCCTGATCCCCCCACCCAAATCGCCACTGTTCAAACCACAGCCCCCAGGTTTCCCAGTCCCACAGTAGTCAGCACCACAATGACTAACTTCAGCATGAAGACTCCCTCAGCCCCCGATCCTGCTCcacaggagaaggagaagaaagaggcACCACCAGGAGAAGTGGCGACCGGAGAAGGGGCGGGGACTGAGGAGCCTGACCTGTCGACACTGAGCTTGGCAGAGAAAATGGCTCTGTTTAATCGCCTGTCTCATCCTCCTGCCCAAAAAGCAGAGGGTGCATGTGCAGATTCACGCCCACGCAGGCGAAATGCCCGGTTCCAAACCCAGCCCATCACCCAAGGGGAAGTAAATCAGGATCTAATGCAGGCAGTAGATCCATCAGATCACACAGATCCTATTCCCATGCCTGATGGGTTTGTAGTACCACCCTATGGCAATCAACTGCAGAATGGAGGACTGAAGTTGGAGCCTCTCTCTGCATCGTTGGTCCGTTCTGTTGCTGCGGTCACCGCCCAGGCttctgttgccatggtgacaaACCTATCCATGGCAATCCCTGCAGATGTTCACACAGAGACATGCCCAGCCCTCTCTCGCACTCCTACTCCAGCAGCACCTCCCAATCTGCTTTTGCCCAATCAGTCACCACATGATAAGCTTCCAGCTTATGAGAGAGGTGTTCGATATTTCAGCCTGACGGAGAGTGGAGAAAACTGCCCCCCTGAGACATGCTCTCCGCCCCCATCAGAAGGGCTGATCCAACCAGCACAAGGCAAGGGCTTGGCTGCTACAGTATCGGCCAATGAGCAGAAACAGGAGGAGGACCATGGGTGTAGACTTGGTTTGGCAGAAAGCGGAGAACCCAAGCCCCCTCATGTGTTTAATcagcgcacacatacacacactattacacacacactctcgcacactCATGGAGAGAGGGAGGCGGGGCTGGCCaaccagaaagagagagagcaagagagggagCATGACAGAGTGAGGCAGCAAGActgggagagagggaaagacaaGATCCTCTTCTCACAAGGTTACCTCTCGCCAGACGTTGCTCAGACGGAGCACAGCAGAGTTGTTGCTTCAGATGCTCCTGAGACTGGTCCCTCAGTGTGTACCGTGAGCACTGCAGTTGTTTCCCTCCAAAGCTCTCCACGCACTTCGACTGCTgcttctcacacactcacatacctGCAGCACAGCCCTCCTTGCACTCCGCCTAAACCCCAGCCGAAGACAATTCAGCCGCACTTCCAAAGCTCTTCTCACAGTTCCCCTAAAACCTCACCTCAGACTCATCCCAAACCCCAGTCATACCTCCAGTCTCCTCCACCACCAGAAGCACAAATCTACCCTGAATCCTCTGGACAGATACAAACCAAAGTATCCCCTCAGACAATCAACCCCACTCAGTCTTATTCCTACACCCCTCCGCAGCCTAAGGTCCCACCTCAGACGCAACCTAAGCCCCAGTACATCATACCAAATCGAATCCAGTCTTCTCCTGTGGCCCCCGAAGAACCAGAGACAATGACGTCAATGTCCATTAAGGagagGTTAGCCTTGCTGAAAAAGAGTGGGGAGGAGGATTGGAAGAACAGGATGAacaagaaacaggaagtggcatCAATGAGCAACCAAATATGGGAAGAGCAAGGCTTCAAGAAGAAGAGGCTGGGAGATGGAGTAGAGGGACAGATGTCCATTGAAGAGCGGAAGCAGATGATCTGTACACGAGAGGAGGCATGGCAAAGCACTGGAAAGGGTGTGGCAAATGACTCTGGCCAGTACACTGTGGCTGCTCGGATGGTGAAGAAAGGTCTGGCTGCTTCCTCTGCAGTGATCAGTCCCATTCTGTCTCCAGTCTCTGCGAAGCTAAAGAATGGTGTGCCAGCTGTCTCCAAACCACAGGAGgAGATTGAGGTCACAGCAGATATGGAATCCGACAAGAAACTGGATAAGTTGGAGACGTTTTTGGGACGTTTGAACAGTAAAGTGACTAGTTTGCAGGAGACGACTCTGACTGTGACTGAGAAGGCTGTGAAAGAAGTCATGAGACTGGATGATGAAATCTTCTCAAAGTTCTATCGGCATGTGACAGACATCCCACGCAGCATGCCGAGAGTGCCGATCGATGATGACTTTGATGCCATATTTGGCAAACATACACCAAAGCTATCATCAGCAATGGTGCACCACAAGAGGGCAATACGTCCTTTACGTAACGTTCAGGCGTCACGTAACCCGCTAAAGATTCTGGCAGCGCGAGAGGACATCAGACACGAGTACACTGAACAGAGACTCAACATCGGGATTCTGGAAAGCAAGAGGATCAAACAGGAGAAAATGAGTAAGAGCTCCAGCATTTCAGATGCTGCTCTGGCTGGTTTGGCCAGCAAGGAGAACTACAGCAGTGTGAGTTTACGTAGCGTCAGCATGTCTGAGCAGGTGACCAACAACAGTGCTGCTCCCTACAAAAAGCTCATGCTCATGCAAGTCAAAGGTCGCAGACATGTCCAGACAAGACTAGTGGAGCCCAGGGTCTCATCTTTGAACAGCGGTGACTGTTTTCTACTGGTTACACCTGAGCACTGCTTCGTTTGGATAGGAGAGTTTGCAAATGTCATAGAGAGAGCAAAGGCATCAGAACTGGCCACTTTTATCCAGTTGAACCATGACCTTGGTTGCCGGGCGACACAAGTGGAGACCATTGAGGAAGGGGTGAACTTTGAAAGCCCTGCTGCAGCTGAGTTTTGGAAAATTCTAGGAGGACCAGCCAGCTACCAGCCGGCTGGTAccccagaagaggatgagtgtTTTGAGAACGCGATCATAGAGACTAATTGCATCTTTCGTCTGGTGGATGATAAACTGCTTCCTGATGATGATTTCTGGGGCAGAGTTCCTCGTTGCTCACTGCTGGGATCCAAAGAGgtGCTAGTGTTTGATTTTGGCAGTGAGGTGTATGTGTGGCATGGTAAAGAAGTCACTCTGGCACAGAGGAAGGTGGCCTTCCAGCTGGCTAAGCACCTGTGGAACGGCACCTTTGACTACACTAACTGTGACATCAACCCACTCGACCCAGGAGGATGCAATTCACTCATACCCAGAAAAGGCCAAGGCCGTCCAGACTGGGCAATATTCGGCAGATTGACTGAACACAATGAGACATCTTTGTTCAGAGAGAAGTTTCTGGACTGGAGAGAGACTGTTGAGTCACTACCAAAGAGCAGCAGTGAGCATTCCTTCGAGCAGAAGCTATCTCAGGGTACACCCTCTCGCTTGGAGTGTGCTGCATATGATGTGGGGTTGATGCTCCCAGTGCTCCAGTCTCCCATCAGCATGGTTCTGGAAGGACAGGACGTAGGTCGCGGTCATGGCCCAGTGGATAGTGGATGTTCTGAGGACCGCCTGCGCTCTCTAGAGATTAGCACACTCAGTGTGGATGTCTGGCACATCCTGGAATTCGACTACAGCCGCCTGCCCAAGCAGAGCATTGGCCAGTTTCATGAGGGAGACGCCTATGTAGTTAAATGGAAGTACATGGTGAGCGCAGCAGtgGGCAACCGGCAGAAGCCGGAGCAGGTTCGCAGTGCTGGGCCAGGGCGAGAGAAGTGCTGCTATTTCTTCTGGCAAGGCAGGAACTCTACAGTCAGTGAAAAAGGAACCTCAGCACTGATGACCATTGAGCTGGATGAGGAGAGAggagcacagGTGCAGGTGCAGCAGGGCAAAGAGCCGCCATGCTTCCTGCAGTGTTTCAATGGCGGCATGATAGTGCATTGTGGGAAGagggaagaagaggaagagaacaTTCAGAGTGAATGGCGTTTGTACTGTGTTCGTGGCGAGGTGCCAGTAGAAGGCCATCTGCTGGAGGTAGCGTGTCACTGCAGTAGTCTGCGCTCTCGGACCTCCATGATTCTGCTCAACATTAACAAAGCCCTCATCTACCTGTGGCATGGCTGTAAGACGCAATCACACACCCGTGAGGTGGCAAGCACCGCTGCTGACAAGATCAAAGAGCAGCGACCACTGGAGGCAGGCCTGCACAGCAGTTGCAATGTGACCATCCTTGAGTGTGAAGAAGGGGCGGAGCCCATTGAATTCTGGGAGGCATTAGGCAGGAAGGATCGTAAGGCTTATGACTGCATGCTTCAAGatccAGGAAAGTTTAACTTCACCCCACGTCTCTTCCAGTTAAGTAGTTCATCAGGTGAGTTTGTGGCTCAGGAATTCTTCTACCCATCCAGAACTCCAGACCTGGTCAGCGCTTTCCCCTTCCTCCAGGAAGACCTGTACTCAGCACCACAGCCTGCTCTGTTCCTGGTGGATAACTATCATGAGGTGTACCTGTGGCAAGGCTGGTGGCCACAGGACACGGAAACACCTGGCTCAGCCCGGATCCGCTGGGATGCTGACAGGAAATGTGCCATGGAGACAGTGCTCCGTTACTGCAGAGAAAAGAATGAGCAGAATCCTCAAAAGTCATACTTGATCCATGCTGGACTGGAGCCTCTTACTTTCACTAACATGTTCCCCAGCTGGGAGCACCGTGAGGATATCGCCGAGGTCATGGAACAGgaggcaGAGATGTGTAACCAGATCACTCTGGTGGAGGATGTTCTGGCTCGTCTTTGCCAGAGTATTTATCCTCTTGCAGCACTGCAGAGTCGGCCCCTTCCACACGGCGTAGACCCCCTGCGCCTTGAAGTCTACCTATCAGATGAGGACTTTGAGAAAGCCctggagatgaagagagaggagTATGAAGCCTTGCCAGGGTGGAAGCAAGTCAACCTGAAAAAAGCCAAAGGACTCTTTTAATTGCCTCTcagtagtgatgatgatgaccatGCTCTGTTTCTGTCACAGCTATGGTTCTGTGTGCACTTGGGTAGGGCGACCTTAGCTTGTCATGAAAATGATGCCTTCAGGAATCAGTCACTGACAACAGGGTGATGTGGGTCATGCCGAATGTCACATTAGGTTTAACAGTGTTTACCTGCTGTGGTGTCTGTCTCTGATGTTGACGTGTTTTGTTTCTATGCACTTTCAACAGTCACCACTGTGTGTGATATCACATTTCTATGAACTGTGCTGTGTAGTAAGTTTCTGTACCATCTTTGACAACAGCTGTTCTATTCTCTTCATCTTATTAAAGTAAAGGTAAGTCTAGTCAAGTCTAGTTTCTCTGTCTTCCCAACTTTTCCTGGGATAGTGCTGTCTGCTTGAGGAAAATGTAGCCTAATTTGTAGCAAGAGAGTGTACACTCTTCTAATTTTCAAGTTGCTCTTGTATTTTCCATCTTCAGTGGAGTTTACAAGTATGTAAGTTCCTTTCTACTGTGTGAATGAACTTTGGCTGTTGTCAGGTGATCTCTCACATTATAGGTCCTGGAGTCATTGTTTGTGCTTGTTATAACACTATGAAATATGTGAAGAGAATtaaaagatgaattaatgaatgaaacactgtaaatgtacaGCATAGTGCCTTGCTTTTGTGTACAGTTTATATACAGAATGGACTCTAGTCTGTATTTCAAAGACTTACTTTGTGATAAAGGCAATGGTAATAAAGCAGATTTACACTTATCACCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378022 lncRNA downstream 47146 12772649 ~ 12796934 (-) True G319186
TU378012 lncRNA downstream 64854 12754768 ~ 12779226 (-) True G319178
TU378017 lncRNA downstream 78089 12764254 ~ 12765991 (-) True G319182
TU377987 lncRNA downstream 195194 12633893 ~ 12648886 (-) True G319163
TU377875 lncRNA downstream 259991 12583865 ~ 12584089 (-) True G319059
TU378345 lncRNA upstream 17305 12908479 ~ 12915491 (-) False LOC113533649
TU378362 lncRNA upstream 98127 12989301 ~ 13021880 (-) True G319467
TU378376 lncRNA upstream 137935 13029109 ~ 13029704 (-) True G319474
TU378398 lncRNA upstream 178125 13069299 ~ 13069522 (-) True G319496
TU378446 lncRNA upstream 227614 13118788 ~ 13119111 (-) True G319544
XM_034297708.1 mRNA downstream 4067 12834674 ~ 12840013 (-) True LOC113533473
XM_034314883.1 mRNA downstream 11551 12820071 ~ 12832529 (-) False LOC113533584
XM_026925813.2 mRNA downstream 11551 12821227 ~ 12832529 (-) True LOC113533584
XM_034314884.1 mRNA downstream 12557 12821227 ~ 12831523 (-) False LOC113533584
XM_034297707.1 mRNA downstream 86936 12756704 ~ 12757144 (-) True LOC117595732
XM_026925923.2 mRNA upstream 17279 12908453 ~ 12928071 (-) False LOC113533649
XM_026925924.2 mRNA upstream 17279 12908453 ~ 12927614 (-) False LOC113533649
XM_026925925.2 mRNA upstream 17279 12908453 ~ 12927351 (-) True LOC113533649
XM_026925673.2 mRNA upstream 49354 12940528 ~ 12964781 (-) True kcnj9
XM_026925491.2 mRNA upstream 95088 12986262 ~ 12999987 (-) False cdc34b
trnaw-cca_17 other downstream 1295641 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 2315830 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 3870868 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 3889970 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 3958371 8883649 ~ 8885709 (-) True G317176
TU379789 other upstream 1840738 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 2336298 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 2796084 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 2796084 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 3466400 16357574 ~ 16367004 (-) True G321462

Expression Profile