RNA id: XM_034314679.1


Basic Information

Item Value
RNA id XM_034314679.1
length 3122
RNA type mRNA
GC content 0.42
exon number 11
gene id gbp2
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11287176 ~ 11325246 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCCTTGGGCAAAGAATGTTAATGCTGTTCAAAGCCATGGAGAAGCCAGTATGTCTGATTTGCAACGATTCTGAAGGACAGCTGTGTGTGGTGAAGGAAGCTAAAGAGATACTTGATGGGATCACTCAGCCAGTTATTGTAGTGTCTGTGGTGGGGCTCTACCGCACGGGGAAGTCTTACCTCATGAACCGCCTAGCGGGAAAACAGACAGGCTTTGATCTGGGCAGCACCATAGAGTCAAAAACTAAAGGCATCTGGATGTGGTGCATTCCACACCCCATTAAAACAGGACACACTCTGGTGCTGCTGGACACTGAGGGACTCGGGGATGTGCACAAGGGTGATGAAAAACATGACACATGGATCTTCTGCCTGGCTGTCCTGCTCAGTAGCACTCTGGTCTACAACAGCCTTGGGGTCATAGACAACAATGCACTTGAGAAGCTACACTATGTGACAGAACTGACTGAGAACATCCGGGTGAAAGCACAGAGAAGTGGTGACAATGATGACTCAGCAGAGTTCATGCGAGTCTTCCCCTCCTTCATCTGGACTGTGCGAGACTTCACGCTGGAGTTGAAGAAGAATGACAAGGCCATCACAGCTGATGAATATCTGGAAGGTGCTTTGGAGCTTAAAACTGGTTCTTCCTCTCTTATTGAGAAGTTCAACCTGCCCAGGCGCTGTTTGCGTGGCTTTTTCGCAAAACGGCGGTGTTTTGTATTCCCACGGCCAGCCGGAGATGATGACCTGGCAAGATTGGAGGAGCTGTCTGAGACGGACCTTGACAAACGGTTTCTGCAGCGTGCTAAGGAGTTCTGCAGCTATGTTTTTGGAAGTGCCAAACCAAAAACCTTAACAGGGGGACGGATGCTCATCGGCAGTGCTCTGGGCAGTTTGGCGGAGGTGTATGTGGAGGCAATTCGTAGTGGCCAGGTTCCTTGTCTGGAGAATGCAGTGGAGTCTTTGGCTAAGATCCAGAATGAGCGGGCAGTGGAACAGGGCCTGCAGGTCTACCAGAGTAAGGTTTATGAGTCAGTGTGCTTTCCACTAGACCCATCTGAGCTATCAGACATCCACAGAAAAGCAGAGACGGCGGCTATTGACATCTTCATCAGTACTTCCTTCAATGATGCTGAGCAAAAAGCACAGCTGAGGCTCATGGAAAAGATCCAGAATGTGTATCAGGAGCTGTGTGGTCTGAATAATGAGGAATGTTTGAAAGTTTGTAAGCTGGAGCTCACACGGGTGTTTACTCCTCTGGAGGAGGCTATGAATGACGGCTCATTTATGTGCCCTGGAGGATACAGAGAGTACCACTATCAACTCCAGAGCCTCTCAAATGAATACAGAGCATGCACGCACAAACAATTGATGagtgagGAAGTGTTGAGTCGGTATCTGAAGGAGAAGGATCGGTTTGGGAAGAATATTCTTTTAGCTGATCAGTGCCTCACTGAAGCAGAGCAAGAAAAGGaagTGGAACGTTTACAAAAGGAGGTTCTAGAGCAGGAGAACAAATCTTTAGAGCAGATGTCGAAGATTAAGGAGCAGGCATTCCAGGACCAGCAGAGGACCTATGAGCAGCACATAACCCAGCTGATGGAACGCATGGAGAAAGAGATGCAGAGATCAAGGGAAGATAACGAACGAGTGCTGGAGGCTAAACTTAGAGAACAGAAGGCTCTGCTGGATGAAGGGTTTGAGGAAAGAGCGGAACTGATGAATAAAGAGATTCAGAGTCTGAAAGGAGAGATAAAGAATGAGGACGAGTCTAAGAGGTCTACACTCAGTAAGGTAGTGGATGGTGTGGGCACTGCAGCAACTCTGTTCCTGCCTGGCATCATCCCTAAACTTGCCGGTTTTGCCGCATCATTGTTTTCACAATTTCTTTGATCATTTATTTTGCTCATCGCTCCAATCTCTGCCTTAACTTTTATATAGAAGCAGTTGTACACTGTGgtgcacacatttctgattatttgctataaattttttttaaactaggcagatttgaagtggaaaaaaaaaagaatctggaAACCCCAGGGTGGAAGGTCAGCAAATCAGTGGAACATAAGTTtctatctgtcaaatagcaacaacTCAAAAGTGGTTATTAGTATtacaatggaatttaaaatttatgtttgTAAATGAGGATATGGATTGAGGCACTTAAGGTAATAAGAAAATTTGATTACAGAGATGCATGATGGTgtttactttttgtttgtttggggtttttttgtttgtcagtatttttattgtttcagtTGTACTTGGAATTGTCTTGGATTTAATCCTTTTCAATTTTGAACAGTTTTACAGCTGCTCCTCTATCAAGTTATTTAGTCTCTTCTAACAGTAATTTGATTAAATTTATGTTGATGAAGCTTGAAAACGTTGCCATAGAAATTTTAATAATGAGTAACTTACATTTTATTAGACCACAATCTGTAAAATGTACTTTAGCAGTGTGATAATGCTAACATTTAGGTTGAATTAGTGATTGCACAGTGTCagacatggattttttttttcaatactttGTTAATTCTTTGCTTTTACAATTCAAAACTTATATCCCATGCCTTTACATTACTAAATTATAAGCATAAgtttttctaaattaatttcTGAGGCACTTGTAGTGTGTCACACACTATAAATCACTTAAACACCACAGTCAGAACAAGGTGTAATTTTATGCAGTCTTAATCAAATCAAGGGCTCCAAATCCATCACAGCCATCATTTCTACTAGATGGTTTAGTGGTACAAATTGCTAGTTTTATGAGAGGTCTTTGACTTCAAATAGCCTTTTATTCTACATTAAGTGAGTACTTGACCCCAGTACTGGAAACCCCATGAGCTGTTTTCGTGTTATGGTAGATTACATGTTACATTATGCTATCAGTACATTACATGATATAGTATATTATCAGCAATGTTATGGGTGGGGAAAATCGCACCCAAaaatacttgtttgtttgtatgttttttgtttttgtttttttagttgctGAGCACATTTGCCACTATTGTCATGTTGTGCTTGTTTTACCCTTTTTGACTCCTAAtgcacttatttaaaaataaagttcagctatatttctaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377193 lncRNA downstream 99776 11187197 ~ 11187400 (-) True G318479
TU376961 lncRNA downstream 278006 11007152 ~ 11009170 (-) True G318293
TU376853 lncRNA downstream 365614 10847475 ~ 10921562 (-) False G318202
TU376854 lncRNA downstream 395621 10845723 ~ 10891555 (-) False G318202
TU376852 lncRNA downstream 439393 10845723 ~ 10847783 (-) False G318202
XR_003403404.2 lncRNA upstream 88780 11394881 ~ 11411164 (-) True LOC113533221
TU377280 lncRNA upstream 94564 11400665 ~ 11401502 (-) True G318552
XR_004580316.1 lncRNA upstream 98447 11404548 ~ 11411161 (-) False LOC113533221
TU377282 lncRNA upstream 99273 11405374 ~ 11410232 (-) False LOC113533221
TU377417 lncRNA upstream 313775 11619876 ~ 11705877 (-) False wu:fb63a08
XM_026925127.2 mRNA downstream 29743 11254430 ~ 11257433 (-) True scg2b
XM_026925128.2 mRNA downstream 30282 11254430 ~ 11256894 (-) False scg2b
XM_034297704.1 mRNA downstream 56785 11225802 ~ 11230391 (-) True LOC113533464
XM_026925438.2 mRNA downstream 129847 11108408 ~ 11157329 (-) False mbnl1
XM_026925675.2 mRNA upstream 161019 11467120 ~ 11468787 (-) False hes6
XM_026925674.2 mRNA upstream 161019 11467120 ~ 11468787 (-) True hes6
XM_026925725.2 mRNA upstream 186493 11492594 ~ 11496391 (-) True LOC113533529
XM_026925340.2 mRNA upstream 243682 11549783 ~ 11572390 (-) True acsl3b
XM_034297713.1 mRNA upstream 378734 11684835 ~ 11705835 (-) False wu:fb63a08
TU376553 other downstream 758926 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 2313964 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 2333066 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 2401467 8883649 ~ 8885709 (-) True G317176
XR_003404406.2 other downstream 2798547 8477223 ~ 8488629 (-) False vcpip1
trnaw-cca_17 other upstream 242267 11548368 ~ 11548439 (-) True trnaw-cca_17
TU379789 other upstream 3425811 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 3921371 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 4381157 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 4381157 15687258 ~ 15724356 (-) False LOC113533563

Expression Profile