RNA id: XR_004580317.1


Basic Information

Item Value
RNA id XR_004580317.1
length 1575
RNA type misc_RNA
GC content 0.57
exon number 11
gene id kdm4ab
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19476112 ~ 19507197 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgcgcagtgctgAGCTAATGGAGGTTACGGGTTTCGGCTTTTAAACGTCCGGTGTTGAGCGAAGTGACTGAACATCGCTAAAGCCTCAGGGGGAAATTCCTCGCAGTTTATTCGACATCAGCGGATCGGATCTGCCGGGAGCGAGGATGGCGTCCGACTCGCCGTCTTCCTCCTGTAAAGGGATCATGACGTTTTACCCGACGATGGAGGAGTTTAAGAGCTTCAGCCGCTACGTGGCGTATATGGAGTCTCAGGGAGCGCACAGAGCCGGACTGGCCAAGATCGTCCCTCCGAAGGAGTGGAAGCCCAGACGCTCGTACGACGACATCGACGACTTGTTGATCCCGGCGCCGATCCAGCAGGTGGTGACGGGTCAGTCCGGACTCTTCACACAGTACAACATCCAGAAGAAGCCCATGACCGTGAAGGAGTTCCGCAAGACGGCCAACAGCGACAAGTTCTGCAGCCCTCGCTACGACGACTTCGAAGAGCTCGAAAGGAAGTACTGGAAAAACGTGACCTTCAACCCTCCGATCTACGGAGCCGACGTGAACGGGACGCTCTACGACCCCGACGTCGACGAGTGGAACGTGGGCCGCTTGAACACCATCCTGGACACGGTGGAGAACGACAGCGGCATCACCATCGAGGGGGTGAACACGCCCTACCTGTACTTCGGCATGTGGAAGACCACGTTCGCTTGGCACACGGAGGACATGGACCTCTACAGCATTAACTACCTTCACTTCGGCGAACCGAAGTCATGGTATAGCGTGCCTCCGGAGCACGGGAAGAGACTGGAGCGTCTCGCGAAAGGATTTTTTCCCGGAAGTTCTCAAAACTGCGAAGCTTTTCTCAGACACAAGATGACTCTGATCTCTCCCTCCATTTTGAAGAAATACGGCATCCCTTTTGAAAAGatcaCTCAGGAAGCTGGAGAGTTTATGGTGACGTTCCCGTACGGCTACCACGCCGGATTCAATCACGGATTTAACTGCGCCGAGTCGACCAACTTCGCCACGCAGCGATGGATTGATTACGGAAAGCAGGCCATTCTGTGTTCCTGTCGGAAGGACATGGTGAAGATCTCCATGGACGTGTTTGTGAGGAAGTTCCAGCCCGAGCGCTACGAGTTGTGGCTGGCGGGGAAGGACAACGCTCCCATCGATCACACCAAACCCACTCCAGAGGCGGCGGAATTCCTCGGAGGCAAGAAAGGAAACTTCGGCCATCGAGAGCCTTGTACACAGAACCAGAGCAACGACTCGTctaaaaaaaAGCGTGGCCAAACAGAGAATCGGTACCAAGCGGCACCGTGTGTGTTTGGAGGTACCGGACGATGTTCTACCGAAGAGCGACGCGCCGTATGACGACTCGGAGTACGGGAAGAAGGGACGCCTGTCTCCACGCGCCGATCCGAGCCGGGACAACACCGagTGCAGCAGTCAGTCGAGTGTAAAATCTCCAGACGGCAGGAAGTGGCTGAAGCTCGGCGATCGTTCCGAGAGGGCGGTCTGCGTTAAGTCGGAGAACGCCGCTGTGACCTCGGGCTCGGCCGCGGCGTGTCCTCAGGCC

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU382883 lncRNA downstream 4831 19438223 ~ 19493730 (-) True G323308
TU382876 lncRNA downstream 107204 19391157 ~ 19391357 (-) True G323303
TU382869 lncRNA downstream 112129 19386231 ~ 19386432 (-) True G323298
TU382624 lncRNA downstream 183091 19314511 ~ 19315470 (-) True G323092
TU382623 lncRNA downstream 223165 19230354 ~ 19275396 (-) True LOC117599938
TU382911 lncRNA upstream 94912 19602109 ~ 19602336 (-) True G323327
XR_004580334.1 lncRNA upstream 303271 19810468 ~ 19814211 (-) True LOC117599987
XR_004580349.1 lncRNA upstream 308017 19815214 ~ 19817065 (-) True LOC117599996
TU383418 lncRNA upstream 614573 20121770 ~ 20180561 (-) True G323706
TU383429 lncRNA upstream 622056 20129253 ~ 20185132 (-) True G323709
XM_026946333.2 mRNA downstream 42146 19393253 ~ 19456415 (-) False st3gal3b
XM_034314501.1 mRNA downstream 42146 19393253 ~ 19456415 (-) False st3gal3b
XM_026946331.2 mRNA downstream 42146 19393253 ~ 19456415 (-) False st3gal3b
XM_034314500.1 mRNA downstream 42146 19393253 ~ 19456415 (-) True st3gal3b
XM_026946332.2 mRNA downstream 55928 19393253 ~ 19442633 (-) False st3gal3b
XM_026946177.2 mRNA upstream 5525 19512722 ~ 19668895 (-) True ptprfb
XM_034314903.1 mRNA upstream 401912 19909109 ~ 19985267 (-) True pbx1a
XM_026946364.2 mRNA upstream 406715 19913912 ~ 19985267 (-) False pbx1a
XM_026946344.2 mRNA upstream 598775 20105972 ~ 20110891 (-) True tmem275
XM_026946370.2 mRNA upstream 604173 20111370 ~ 20121708 (-) True kncn
TU382527 other downstream 420644 19075000 ~ 19077917 (-) False G323011
XR_004576919.1 other downstream 492182 19003239 ~ 19006379 (-) True tceanc2
TU382290 other downstream 742968 18753772 ~ 18755593 (-) True G322826
trnav-aac_21 other downstream 751317 18747172 ~ 18747244 (-) True trnav-aac_21
TU381951 other downstream 1103738 18394249 ~ 18394823 (-) True G322538
TU383446 other upstream 688097 20195294 ~ 20195672 (-) True G323726
XR_003404720.2 other upstream 802300 20309497 ~ 20309573 (-) True LOC113546475
XR_004576925.1 other upstream 807940 20315137 ~ 20315212 (-) True LOC117595748
TU383462 other upstream 877004 20384201 ~ 20411806 (-) False LOC113546371
TU383528 other upstream 960413 20467610 ~ 20469469 (-) False LOC113546455

Expression Profile