RNA id: XM_034314719.1


Basic Information

Item Value
RNA id XM_034314719.1
length 1655
RNA type mRNA
GC content 0.41
exon number 12
gene id LOC113546333
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16873882 ~ 16882758 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGTGTGACCCAGATTATCTGGTACCTGCTGGCCCCACTTTTGCTACTGCCGATGATTGTCAACATCTGCATCCTGCAAAGAAACATCtgcaaagaaatgcaAAGCAGAGACTCAGACCAGGACCAGAGCAATGACACCACTGTTCATACAATGTAGAGAGCATGAGGACACTAAAAAATGTTGCTGCAAAATATGGAGGATCTGTCACTATTCCATGTCTTTATGAAAAGCAATACAAAGCAAACCCTAAATTCTGGTGCAAAGGGTACTATTGGGCTTCCTGCAGCATAGTAGCCTATGCAAGCACAAATGGAATTACATCATTGGCTGATCATCCGGCGCAGAATATGTTCACCGTGGAACTGAACCCTGTCTCTGATTCTGGAACATATTGGTGCGCTGCAGAAATTGGAAGTAAATGGGACCCAGATGACCGTAATTATTTGTACCTGACGGTTAGTCAAgATCCTGATCTGTCTGTGATGGAGAGCAGAGTAAAAGGTAATGAAGGTGGAAGCGTCACAGTCCAGTGTTTCTACAGCACTGCGTATTGGAATAAACAGAAGCAGTGGTGCAGATTCAAAGATGAGTGGTGCAACACAGTGAGGAAGACTTCCACAGCCCAGACTTCAGCAGTGCAAATCACTGATAATGGGAGCTCCTTCAGAGTGCAGATGAGTAATCTGAAGGAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTTCAGGTTCCTGTTCATATCAGTGTTGGTGCTGAAGCTCCAGGTCTGCCTGATAACCAAAAGGAAGATAAAGTATCAAATTTTGAAGACACTATACTGGCTTTTTGCATCATCTCTGGGCTCTTGTTGGTGCTCATGGTGGTTGGTTTGGTCATCTGGAAActtaaacagaaacaaaCTGGACAGTTAGTCACAAACAAAGGATATGACCACAGTCTGATAAACACTGATGTGGATTATGGTGCTTTCGTTTTCAGACAGCCGAAGAGCAATCCAAACCAGAGTCCCAAAGCACGTGAGAATGCGGTGACATATAGCACTGTGGCAGATGAACAATGCAAGGCCTCATCAGCTTCTGAGCCGGAAGTCACCTACAGCACACTCAAAATCTCTCACAATCCAACAGTCTCTCCCGTTCCCCTTAATGATAAGGTCATCTACAGCTCAGTAAAACATCACTAATGAGAGGCTACTGAAAAAACACCTGCAGTGGAAAGTCTTTGCAAGCAGTGGTGTactacacacgtttttttttgtgttcctCCATCCAGAATCTGGAATCCTTTACTGTGAAATAACATGAAGGCAGATGGATTTGTcttttctgttaatttttttttttttttttgcccaccataaacttttctttttgtgtcAGAAAGAGCACGTCTCTGTGGAGGAAGTTATtgttttgtctgtctttttttttttttttttttttttttttttttttttctttcagtagaCAGCAGAACATTATGACAAACTGAAtttacagaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggttgattttttttatttttttttttaacaatgattTCAGGAATGTATCTACTGCCAAGGTATATCCAGTAACTAAACATTCATTTCTTaacatagtatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380827 lncRNA upstream 14304 16792714 ~ 16859578 (+) True G321591
TU380813 lncRNA upstream 81444 16792128 ~ 16792438 (+) False LOC117595733
TU380818 lncRNA upstream 84275 16789186 ~ 16789607 (+) True G321585
TU380826 lncRNA upstream 93680 16779865 ~ 16780202 (+) False LOC117599973
TU380824 lncRNA upstream 101433 16759842 ~ 16772449 (+) True G321589
TU380843 lncRNA downstream 10055 16892813 ~ 16893024 (+) True G321602
TU380963 lncRNA downstream 75987 16958745 ~ 16960734 (+) True G321704
TU381407 lncRNA downstream 598627 17481385 ~ 17482562 (+) False fuz
TU381408 lncRNA downstream 599155 17481913 ~ 17483644 (+) False fuz
XR_004580280.1 lncRNA downstream 642813 17525571 ~ 17537160 (+) True LOC117599934
XM_034297724.1 mRNA upstream 4936 16860823 ~ 16868946 (+) True LOC117595734
XM_034314717.1 mRNA upstream 14200 16851485 ~ 16859682 (+) False LOC117599970
XM_034314713.1 mRNA upstream 14204 16838768 ~ 16859678 (+) True LOC117599970
XM_026946365.2 mRNA downstream 48550 16931308 ~ 16937488 (+) False them6
XM_026946366.2 mRNA downstream 48554 16931312 ~ 16937488 (+) True them6
XM_026946367.2 mRNA downstream 53047 16935805 ~ 16938674 (+) True si:ch73-52e5.2
XM_034314648.1 mRNA downstream 59084 16941842 ~ 16947346 (+) True ftr67
XM_034314649.1 mRNA downstream 70219 16952977 ~ 16956560 (+) True LOC117599965
TU380835 other upstream 21458 16851445 ~ 16852424 (+) False LOC117599970
trnag-gcc_20 other upstream 686841 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 688315 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 689740 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 741518 16131335 ~ 16132364 (+) True G321257
XR_004580277.1 other downstream 596076 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other downstream 596076 17478834 ~ 17483677 (+) False fuz
XR_003404718.2 other downstream 687891 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 1343804 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other downstream 1343804 18226562 ~ 18227136 (+) False si:ch211-162e15.3

Expression Profile