RNA id: XM_034314720.1


Basic Information

Item Value
RNA id XM_034314720.1
length 1713
RNA type mRNA
GC content 0.41
exon number 11
gene id LOC117599971
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16750183 ~ 16755500 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGACACAGTAACAACTTCACACAGAAGCAGGACTCAAGAAAAGCTCACAATTTTTTCAACATCAGAACAAGTTTAACATGagctgctttttcatttttattctcgtCATTTCCAGTGCTGTCTGTCAGGCATCGAGGGAGTTTAGTATTAAAACTGGAGAATCTGTCACTATCCCATGTCATTATGATAGGAAATATATACAACATAAGAAATACTGGTGCTATGGAAGAACATTCGATTTCTGCACAATTCAGGCGTATGCCAGTAATACAAAGGGGAAAGTGACAGTGACTGATTACCCAGCTGAGAGTCTCTTTACTGTCACAATGAATAATCTCCAGACAGGAAATACTGGATGGTACTGGTGTGTTGTAGAGATAAGTGGAGTAACACAGCCAGATAAACAGTACCTTTATATCACAGTGAAATCAGATCCTGATCTGTCTGTGAGGAACAGCAGAGTGAGAGGTGAGGAAGGAGGCAGTGTCACAGTGAAGTGTCTCTACAGCGCTGCATATCAGAATACACAGAAGCAGTGGTGCAGATTGAAAGATGGACGCTGCAACACATTTAGGAAGACTGCCACatcccagaattcagcagtgaacATCAGTGATGATGGGAGAAGATCCTTCAGTGTGCAGATGAGTGGACTGAAGAAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTGCAGGTTCCTGTTCACATCAGTGTCCATGATCCACCTCCAGctGTGACTACAGCAGTGACTACAACAGTCACTACAACCACTCGCCATGTCAGTACTTACACATCTGCCTCGAAGCACAATTCAGCAGCATCTGTGACTGCAGTTTCTAGCAGTGATGAAACCATTGGGAGTGAGACACTGATCCATTGGTACCTGGTGGTCCTTATTTTACTACTGGTGATACTGGTCATGATCATCTGCATGCTAAGAAATAAATGCAAGAAACAAATCAGGACCAGAGAGTGGAGCAATGACACCACTGTTCACGCATCTTCAGCATCAAAAGATAATGAGCAGGACGTGACCTACAGCATTGTAAACATTGCTTCCAAGAATAAATCTATGTCTCCAAATAATGTTGATGATGAGACCGTCTACAGTACCGTGGTTTACCAGTAAGAGatgtatatataagtatataaAGATTGATGTCCTGTTTGGCTGGAAGGAAACTGTGGCTGGTGCCTCAGGGATCTCTACTGGGTCTCATGTTCATCCTCAGCATTATGAACAAACCCAATCAGGACAAGGACAACATACCCCACACTCATACCACTGACTTACATCATAGTCACATGACCCTCAGTCATTCAGAAAATACCAGTTTCCTTACTGTAGCTGCCACATGCTAACTGCTAAAGCTAACTCAATACAAGTCCTACTACACCAGCTATCATCATTTCCATCCACACAGCACACACCAGTCCAGCCCTTAAATACAGACATGCGTATGCAACATAACACACTGAGGAACTTACACAActgtatgaatataaatgtattaaaaaaaaaagattgttgtTTGCAAATAAAAAGAGCAATTCCCACATCTAGTATATCTATGTGTTCTTATATATTTCTCACATTTGCATATAAATACAAGGACCGACAAAGTGGTACATTTACATGTCTAATAAATATCTGAAGCATTCAGGGTTTTTGTCGCTCATCAATGTTTTacttgtaaataata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380811 lncRNA upstream 6068 16742894 ~ 16744115 (+) False LOC117599972
TU380777 lncRNA upstream 46367 16666430 ~ 16703816 (+) True G321563
TU380660 lncRNA upstream 149590 16594197 ~ 16600593 (+) True G321454
TU380640 lncRNA upstream 293015 16456443 ~ 16457168 (+) True G321435
TU380639 lncRNA upstream 304059 16436199 ~ 16446124 (+) True G321434
TU380824 lncRNA downstream 4342 16759842 ~ 16772449 (+) True G321589
TU380826 lncRNA downstream 24365 16779865 ~ 16780202 (+) False LOC117599973
TU380818 lncRNA downstream 33686 16789186 ~ 16789607 (+) True G321585
TU380813 lncRNA downstream 36628 16792128 ~ 16792438 (+) False LOC117595733
TU380827 lncRNA downstream 37214 16792714 ~ 16859578 (+) True G321591
XM_034314722.1 mRNA upstream 1843 16742805 ~ 16748340 (+) False LOC117599972
XM_034314721.1 mRNA upstream 1843 16743910 ~ 16748340 (+) True LOC117599972
XM_034314724.1 mRNA upstream 1843 16743910 ~ 16748340 (+) False LOC117599972
XM_034314725.1 mRNA upstream 1843 16743910 ~ 16748340 (+) False LOC117599972
XM_034297722.1 mRNA upstream 9580 16718816 ~ 16740603 (+) True LOC113533485
XM_034314728.1 mRNA downstream 1131 16756631 ~ 16788968 (+) False LOC117599973
XM_034314730.1 mRNA downstream 1131 16756631 ~ 16761050 (+) False LOC117599973
XM_034314729.1 mRNA downstream 1131 16756631 ~ 16761049 (+) False LOC117599973
XM_034314731.1 mRNA downstream 1131 16756631 ~ 16760959 (+) False LOC117599973
XM_034314727.1 mRNA downstream 6781 16762281 ~ 16773316 (+) True LOC117599973
trnag-gcc_20 other upstream 563142 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 564616 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 566041 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 617819 16131335 ~ 16132364 (+) True G321257
XR_003403417.2 other upstream 630150 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380835 other downstream 95945 16851445 ~ 16852424 (+) False LOC117599970
XR_004580277.1 other downstream 723334 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other downstream 723334 17478834 ~ 17483677 (+) False fuz
XR_003404718.2 other downstream 815149 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 1471062 18226562 ~ 18227233 (+) False si:ch211-162e15.3

Expression Profile