RNA id: XM_034314736.1


Basic Information

Item Value
RNA id XM_034314736.1
length 3946
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC113533360
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16425377 ~ 16455986 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtgtatgagtgtgtataagGCGCATTATTTGGCAGCCGAGGCGGCGGAGTGGAGCGGGGAGGGCTGAGCTCAGGGTATCCCCACTAGtcttgttggtttttttttttcttcacgcTGAATTATCGGAGTTAATTGTCACTCAGAAGCTGAAGGAAGAACCTGTGATAAACGGATAAGCACCTCTCGGAGCCGGTGTGGCCATGGGTGACGAGGCGGTGCGTCAGACGCGCAGTCAGAAGCGGGCTTTAGAGCGGGAGGCTCTGCCAGTGGACTTGGATGCGAAGAAGGTGAAGCTGGACGGTGGAGACAGGGATGATCGGCCCGTGCTGCGTCCCAGGCCCGAGGCCTCGGCGCGCAGCTCCAATATCCTGAGCACCGGCGAGGTGAAGGCCACCATTAAAGTGGAGCTGCAGACCAGAGACGAGCCTGTGGACATGAGCACCACCAAAGGcgATGttaagaaagagaagagacCTCCATCACCTGACGATGTCATCGTTCTGTCTGATAACGAGCCATCCAGCCCACAGATGAATGGCGGGAGCCATTTCAAAGAGCTTGACACAGATCTGCTCATGaggagcAGTCCTGAAGAGAGAGTTCGCATTATAAAGCAACTGAAGGAGGAGCTGAGGCTAGAAGAGGCCAGACTGGTATTGTTGAAGAAACTTCGACAGAGCCAAATACACAAGGAATCCAATGTACAGAAGCCCTTAGGTTCTGGGTctgtggccacgccccctcctCTGGTGAGAGGCTCAGTGACCAACAAAGGAAATCAGCCACAGGTTCTGTCCAGCCGGAGCTCAGCGGGTGTCATCCCTCCTCCTCTGGTGCGCGGAGGCCAGGTGTCCAAACATGGCTCGCAAAACTCCCAGATCATCATGCCTCCGCTGGTGAGAGGAGCTCAGcCGATCTCGGTGACGCCACAGCAGATAGCGAGTCTGcggcagcagcaacagcagtaCTCCAGCTCAGGCCCTCCGCCCCTGTTGCTAGCCCCTAGAGCCTCTGTGCCCACTGTTCAGGGCCAGAAAATCATCCAGCCCAGCCTCATTCATGTGGCCAATGTGTCTAATGCCAACCTGCTCGTCAACGTCAGTCCGTCAACCACCAACCTGAAGACATCCTCCGGGGGCACTCAGAGCAGCGTGGCAAGTGCCAACGAGTCTCCTGCCAGCCGGCAAGCGGCGGCTAAGCTGGCGTTGCGCAAGCAGCTGGAGAAGACTCTGCTGGAGATTCCTCCTCCCAAACCCCCTGCCCCTGAATTCAACTTCCTGCCCTCAGCAGCCAATAATGAGTTCATCTACCTGGTGGGCCTGGAGGAGGTTGTGCAGTGCCTGCTGGACGCCCTGGGGAGAGGTAAACAGGGAGGTTCTCAGACTTCTGTTTCCACAGAGCCATTCACATGCACTCAGTGTAAGACTGACTTCACCTGCCGCTGGCGTAAGGAGAAGAGTGGTGCCATCATGTGTGAGCAGTGCATGTCCACCAATCAGAAGAAGGCCCTGAAGGCTGAGCACACCAATCGACTGAAGGCAGCCTTCGTCAAGGCcctgcagcaggagcaggagatTGAGCAGAGGATCCTCCAGCAGGCCTCCTCTCCCATCTCGCAttcatcttcctcctcttcttcctcatcctcgAGCCACGTGGTGAAGTCGGAGCAGCAGGTGATTGTCTCTCAGCAGATCAAGCAGCGCTCTTCTTCCACGCTCCAGCAGCACAGTCGATCTAGCCAGCCAATCAGCCGCCACCATTCTATAGCACAGAGTTCTGCTCAGCTGTCCCGCGGTGTTCAGCAGTCAGCAGCGGCCCTACGTGGTGTGTCACACTCCTTCTCTCCAGCCTCTCAGCTCCAGAACGCTGTGGCAGCTGCCGCGCTGGTCAGCAGGCCAGGTAAGCATGCTGTGCTtcaggggtcaaaggtcaacagCAGAAGTGCCAGCAGCAGGACCTCTAAGACAGTGACCTCCTCCACCTGGAGGAAGCGGAACAACGCAATACCAGgtgtgACTGTGGCCTACGTAAACCCCAGCCTGACTGTGCACAAGTCTTCATCGTCGGCGGTGGAGCGTCAGAGAGAGTACCTGTTAGACATGATCCCCTCCAGATCCATCTCCCAGACTGCAAACACGTGGAAATAACCCGACCACGTGTCCCCTTCAGCCGAGCTTTCCTAATGATCACAAACCTCAGCCCTCTTCGAGAACCTCACCTGGAATCCTGGAACAGCTCTAGGAACGGATCTAGAACCTCCGAGATTAGTGTGGGATTATGGAAGAGCTCTAGAGGCTCCGGAGTCTTGCTTTCAATCGTGGAACATATCTTAAAGAAAACCTTTCGGCTTCTATTGCAGCAGATTTTCCTCAATCACCTGGCTTCtgatttttcccctttttcatgtgtgtctctttgaaaaaataaagtttgatcATTGTGCAAGAACAGTGATGTATATTAAAgcaataggctctggatccaccatcaCTCTGAccagttactgaagacgaatgaatgaatgaaaaaaattaaaccaagaagAAATTTAAAGGTTAAAGGGCTTCCACTTGTGCTTTGCTGCCAGGTTGTAAATGTCAGTAGAGGCTGATATTTGTAAGCCTTAACATGACGGCGTTACCCGAGTACTCGGTACTCATGGAGATGATGTGCTGGGAGTCTGTGTACATCCTGCCTTTTGGATTCAAGACACAAAGTGAGAGGCTGTGTCTGTTCTCAATATGAATCATGGAACTTTCATTtctttggaagaaaaaaaacaagttaataGGTTttccttaaaaagaaaaaaaaaaaaaaagactttaaaaaaaataaaaaaaataaaaggtaaataaatCTTAAGTTACAACTGAAAGCCAGCAGTGCTACATGAAGAGCCCTTTTTGGCTAAAGGCAGTTTTTTTGATTGTAAGTTATATAGCTAATCGAGTCTGAGCTTGTGTCCGGACTTGTCTCTTTAAAGACATTGTGCTTCAAAAAActgtttggtctttttttttttttttttcctcctttgcATTTAGTTTTTTAGGTTTAAGTCAGAGTTTAATCATGTCGAGGCTTATTTCAGTCTCAGTAACACATGACCTTGAACAAATGCTTAATGATTTCACTGAGGCAACATGCACTCCCCTTTTTCTTCTCATAAACAAGTCTGAGGGTGATTTTTCATATGTTACTCCCataaattttattcatgttttacgGTTCacaaaattgaaaaacaaaaaaatatctttcATTATAACTGAACAGTcctttacagaaatgtgtgtgatggactggagACTTGTGTTTGTGCATTGATGTTTAATTCCAGTCCACTTGATTTGCGTCCTCGTCTTTATGGTTTGTGTCACTGTTTCCCCCCAGCTTGATCTTCACAGTGGTTTCCAGCAGATTAAGGAACAGCACTTCATAATTTTACTGCCCAAACCCTCGATTGTTACAGATTGTGAAACTGGTCTGTAtttattagtaaaataaatctgtcccCACAAACATCACTAAGTGGGCAAATGGATTTTAGACAACTTTTCTGTTAGCAGAtatgactttctttttttatgtgacTGTTCTACCATCAGCTCACCctgtttctctttgtgttttaaatcattGAAGTCTCATATTACACTTTATATATCGTCGTCGTCTTTGCCATTTGTTCGGCACCCTGACACCACAGATACATTTCATCCTCAGTGTGGATGCTGTACCGTTCAGCTGATGGAGGCGTCCTCAGCGTCTCTGCTTGATGATGTCACACCGCTCTGTTTCGGGGGTTTAATAGCAGTGCTAGCTGCCTCCGGTTCTGCCGCACTGTACAAACTCATGTTACGATTTGTTAGGTTTACTTTTGTTTCCCAGTTTGAgaagtaataataaaagaattttaaCCCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380634 lncRNA upstream 38855 16386257 ~ 16386523 (+) True G321429
XR_004580325.1 lncRNA upstream 238375 16185620 ~ 16187003 (+) True LOC117599979
TU380437 lncRNA upstream 287774 16135324 ~ 16137604 (+) True G321258
TU380433 lncRNA upstream 294373 16130730 ~ 16131005 (+) True G321256
TU380432 lncRNA upstream 294694 16130422 ~ 16130684 (+) True G321255
TU380640 lncRNA downstream 457 16456443 ~ 16457168 (+) True G321435
TU380660 lncRNA downstream 138211 16594197 ~ 16600593 (+) True G321454
TU380777 lncRNA downstream 210444 16666430 ~ 16703816 (+) True G321563
TU380811 lncRNA downstream 286908 16742894 ~ 16744115 (+) False LOC117599972
TU380815 lncRNA downstream 289790 16745776 ~ 16755230 (+) True G321584
XM_026925540.2 mRNA upstream 5970 16404788 ~ 16419408 (+) True mau2
XM_034314659.1 mRNA upstream 5970 16405321 ~ 16419408 (+) False mau2
XM_026925598.2 mRNA upstream 20811 16395946 ~ 16404567 (+) True sugp1
XM_026925599.2 mRNA upstream 21166 16395828 ~ 16404212 (+) False sugp1
XM_026925685.2 mRNA upstream 40157 16376170 ~ 16385221 (+) True rab8a
XM_026925527.2 mRNA downstream 1691 16457677 ~ 16460380 (+) True ndufa13
XM_026925526.2 mRNA downstream 4824 16460810 ~ 16468366 (+) True LOC113533391
XM_026925361.2 mRNA downstream 86348 16542334 ~ 16565021 (+) True LOC113533302
XM_026925003.2 mRNA downstream 164697 16620683 ~ 16629472 (+) True LOC113533121
XM_026925337.2 mRNA downstream 227670 16683656 ~ 16706323 (+) True tgm1l1
trnag-gcc_20 other upstream 238337 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 239811 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 241236 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 293014 16131335 ~ 16132364 (+) True G321257
XR_003403417.2 other upstream 305345 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380835 other downstream 395459 16851445 ~ 16852424 (+) False LOC117599970
XR_004580277.1 other downstream 1022848 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other downstream 1022848 17478834 ~ 17483677 (+) False fuz
XR_003404718.2 other downstream 1114663 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 1770576 18226562 ~ 18227233 (+) False si:ch211-162e15.3

Expression Profile