RNA id: XM_034314748.1


Basic Information

Item Value
RNA id XM_034314748.1
length 5017
RNA type mRNA
GC content 0.47
exon number 23
gene id arhgap45a
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15894001 ~ 15923289 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacacacacacgcgcgcacacacaggAAAACGACTTGCTAGACGCGCGACATGCACGCGCAACTGTCAACGCGCGACTAACGTACCAGACAAACgccgttttgttttgtttgttgttttggctaTGTGTATAGATAAACAAATTACACACTGTTTGTTTCATTAAAacggtaatttttttttttttttttttttttttgaaatgtttactCGGAAGAGAAAGGAGCTATCTAAAACGCCCTCGGTTTCAAAGAAGACTCAGTCAGGAAATCCTGGAGCTCACTGCACCTCTCTCTCGGTTCTTCAGGAGCAGCCTCAGAGAGACACTACCGATGGCTCGTCCACTCTGGCTGTGCCAGATTTGGCAGTTCTGTCCTCATGTCCCGGCACTCCCTCAGCGGTCCACGGTAAGCTCGTGGCATCACCCGCTGCTAACCTGAAGCGCTCTACAGGACTTAGCCGCCATGCCAGCGCTGCAGGGTTTCCTTTTCAGACTGCCGGAACCTGGGGCTTCAGCAGGAACCAAGCGAAGGGCTCTGAGAGCACCGAGGGGACAGCCATCGACGTAGAGGACATCCCGCCTTTACTGAGGGACGTGGCACGCTTCGCAGAGGCTGTGGAGAAGCTCAAGGATGTGGTGCTGTGTGAAGATAAGGAGTCTCGGAGGGCGGTAGCACATGAATATTTGGGGGAGGTGTTGCGCATCCTGCGGCAGGTGATCAGCACCTATCCTTTACTCAACACTGTGGAAACACTCACCGCTGCTGGCCGGCTCATCTCACAGGTCAAAAGCTTCAGTTATGAAGGCAGCAATGAGGCGCAGAAGAAGGACTTTGAAAAAGCCATCGAGACCATCGCAGTCGCCTTCAGCAGCAATGTATCTGAGCTGCTGATGGGTGAGGTGGACAGCAGTACCCTCCTGTCTTTGCCTCCCACTGAGAAGAGCAggTCTATGGAGAACCTGTGCGGACTGCCAATGGGACAGGGTGTGGAGGGAGGGAGCCGATGCGACCACGACGACTGTAtgaTGAGCCCTGAGCAGGTGGATATCCTCCTGCAgcacagtgaaggaggagtaGATTCAGCTCTGGGCTACGCAAAGGCCATCGCCAAGTACATGAAAGACATCATAATCTATGTGGACAAGCGCATTGCACTCGAGATGGAGTTTGCTAAAGGTATTCAGAGGCTATATCACTCAAGCAAGCAGAGCTTCACACAGacccCCATGCCTTTGCTGTCGATCTATTCTCTGGCTCTGGAGCAGGACTTGGAGCAGAGTACGGGTGTGCAGCAGTCCATAAACTCTGTGCTCACACACTCCTTTCTACAGCCTCTGATGCAGCGCAAACAGGAACATGAGAAGAAGCGTCGAGAGATTAAAGAGCAGTGGCAGAGGGCCAAGAGGAAACTGGCAGATGCCGAGAACAACCTGCGTAAGGCACGCCAGTGGTACCTGACCCGCTGTGAGGAATACGAAAAGGCACGGCTCGTGGCCAATAAGGTGGAGGAAGAACACAGTGGAACAGGAAGTGGTTCCACCCACAAGACTCTGGACAGGAAGAGACGACATGAGGAGGAAGCTCGCAACAAGGCAGAGGAGGCTGAGGCCACATACCGCACTTGCATCGCTGATGCCACCACTCAGCAGCAGGAGCTAGAGGACGTGAAGGTGAACGTGCTGAAACAGATCCAGGACGTCATCAGACAGAGTGACCAGATACTGCGCGCATGCACCATATCGTACTACCAGATCCTGCACATGCAGACGGCGGCGCTGCCTGTGCACTACCAGACACTGTGTGAGAGCTGTAAACTTTACGATCCTGGCCAGCAGTATGCTGCACATGTCAAAAACCTGCAGCTCAGCACGGAGCGCGTCACCGTGTTCCAGTTTGAGCCATACTCTGCCTCAGGCACACATCATCTTGCTCGCACCCGTCAGGATAGCATCACTGACGACCAGCAGCAAGGCAACGCAGAGACCCCACACACCAATGAACTGGTGGTATCTGCAGAAGGGGGCGTGGTCAAGACCAGaagagATCGAACTTATCAGGCACATAAATCCTGGCCCTCGACTCTGAGTGACACAGACAGTGTAGGAGGAGGAAGTGGACTGGGTTCTCCTACCACCAGCTCAGGAGATGTCTCAAAGGCTCCAAGACCGGTGTCAGCTGGAACCTTGTCTTCCAACGAGGACATAGAGGAGCAAGATGGAAATGTGACATCTTTTGAACAAAGTATGAATGGGATTGAACCAGAGATGACCGTGCCCACTGGGCCATTTCGCAATGTGGGTCTGTCCAAAGCTGCCAAGACACATCGGCTACGGAAACTCCGTACTCCATCCAAGTGTCGCGAGTGTGACAGCTATGTGTACTTTCAGGGAGCAGAGTGTGAGGAGTGTTTTCTGGCCTGCCATAAGAAGTGTCTGGAGTCCCTGGCTATCCAGTGTGGCCACAAAAAGCTGCAGGGACGGTTACAGCTGTTTGGCCGAGATTTCTCCCAGGTGCTGCAGGGCAACTCGGAGGGAGTACCTTTCATCATCAAGAAGTGCATCCAGGAGATCGAGAGGAGAGCGCTCAATATGAAGGGAATATACCGCGTGAATGGAGTGAAGACACGTGTGGAGAAGCTGTGTCAGGCGTTTGAGAACGGCAAAGAGCTGGTGGAACTTTCTCAAGCGTCTCCACATGATATCAGCAACGTACTCAAACTCTACCTGCGACAGCTGCCTGAGCCCATAATGCCGTTCCGCATGTATAACGAGCTAATGGGGCTGGCAAAGGAGAGTCTGCACACTGAGGGCCCAGACAGAGGAGACGGTGCAAAGGGCCCTGAACTGCTGGATCAGGGAGAGCAGACCGACCCCAAGGTCCTCAACCTGGTAGAGAAACTCAGAGAGCTGCTGAAAGATCTCCCACCTGGCAACACCGCCACACTGAAATACATAGTACGACACCTGCACAGAGTGGCTGAGTTAGAGGACAATAACAAGATGAGCTGCAGTAATCTGGGCATTGTATTTGGGCCGTCCCTGATGAGACCCAAACCCACAGGCGCCACTGTTTCCCTCTCCTCTCTGGTGGACTACCCTCACCAGGCCCGCATCGTGGAGGCCCTCATTGTCTTCCAGGATCACATCTTCACCCCTTCAGACTCCCGGCCCACATCCTCATCCTCCCTGACCTTCACCATCCAGGGCCAAGTGAGTACTGATGAAGCTCAAGAGGTGGAGGAGGAACAGAGCAGGCTGATCTCAGAGCAGGACTGTGGTAACTCTCTGGGCTCTTCCGGTTCCCGCGAGCGCTCTCTGGACTCGGACTCCGAGGGGGAGGACATGGGGAAGGTGACTAAACAGCGAATACTGGTGAGCCAGGAGAGCGAGACCAGCACGGAGGATGACCAGCTAAGCCCCAGAGTGAGTCTGGACCTGAGTACACTCGTCCCAGAGACCATCCCCGAGCAGCCCAATAAGACGGATGACTTCAGaggagcagaagaagaaaagctgGTAGACGAGTAGAGATCAGAACCatcaattcatccatccatttcagTTTGTAATACTACTACGGTAACTTTTTTTTGTCGTTGTTCCCAATATTAAGCGAAAAAGTGTCAAAGTTGAAGAGTCAAGTTACTCTCAGATTAATCAGGGCACTCATAAAAGTCTAATGcactgaaaaattattttaatcttaCAACAGTTCTATTTGTGAGATGGTGGAAAGTATGGTTGTGTATATGATGGTGATGTTTTACACTTATCCTTTctatttgaatgtttttaggCACATTTCTGTTCTATAAGGAGTGAATGTAACAAAAATGAGTTTATAAGTGTTGGTAAGAATGCAAATGAATTTAAGAAAGGTTGTGATAAACAGTCAGTGCTCTTTCTTTGAGAAAAAATCTTGTAAAGACTTATTCCTACTCTTGTTCAGTTTTCCTACTCTTGTGTATcatgaaaagggaaaaagatGATTATTAGGGAGGCTGCATTAGCGCATACAACTACTGAATTTCCACAGTTTCTCAGGTCTGGAAAAGAGTGCCATGAAATCCCATACTTTCCCACAACTGTGATAAGAacaataatttgttaaaaataatttttaatctttataaagCCTCCATTATTTTCTATTACTAATACTCCAAAACTACAGTTAACAAGCAGGAAGGCCATGCACAAAGGTGGACGTGACCAAATATTCTATGATAAGAAAGAAAGGTGATTAAAAAAGCTTGTaaattaaactgtattaaaatgtaaatgaagtaaTTGGGGCATGAGATTATCATTAGAGTGAATTcgtaaacatttattattattttagtgaGTAATTTTATGCATTGGCCACTAGGTGGTAGcattatattttcactttgtcCTTGAAAAAGCGTaaagtcatctgtcctgaagactttcctccGGTTAAAAAGTGCCGCCactggattatttttaattaacttaataTTTCACCATCTTTCTATCAAAGAATATTTGTTACTTACACTCTTATACAGGTATGaatgataaattataaacatggcTCATGttttatcaatattttttttttttttaaatgaatgtttatcatttgtttgttttttttattcatttgcattttgatCAACTCCACTTTTACTTCAGTGCATTTTTAACGAACCAATTTggtatttttcattaatttcccCTCTCATGTGTTGTCATGAGGTAAAATGTCTCCTAATGGCTGAAGGACAATGTTCTAGCACTCTGCATGCACTAGTAGGATTAAGGAGCAGATTGTGGAACATCTTCGATGGTCATAGTGAGACGTGTATACTCGCAAAGAAAGTTCAAAGTTAAATCACAGAAAGTTCAATAACagcaggaataaaacaagatttATTATCTTTACTACTGAAACCAAAACTACAGTGCTGTACAGATCAATATTAATCTATatcattacatcaatttttgtactaaattatattatttgatGTTCTCTTA

Function

GO: NA

KEGG:

id description
K20644 ARHGAP29_45; Rho GTPase-activating protein 29/45

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576905.1 lncRNA upstream 189417 15683071 ~ 15704584 (+) True LOC117600003
TU380138 lncRNA upstream 211792 15625802 ~ 15682209 (+) False slc25a42
TU380131 lncRNA upstream 276878 15616911 ~ 15617123 (+) True G320992
TU380130 lncRNA upstream 277783 15615997 ~ 15616218 (+) True G320991
TU380127 lncRNA upstream 280460 15613194 ~ 15613541 (+) True G320988
TU380377 lncRNA downstream 99197 16022486 ~ 16023068 (+) True G321203
TU380389 lncRNA downstream 118505 16041794 ~ 16043738 (+) True G321214
TU380392 lncRNA downstream 122857 16046146 ~ 16046482 (+) True G321217
TU380395 lncRNA downstream 125805 16049094 ~ 16049308 (+) True G321220
TU380396 lncRNA downstream 126431 16049720 ~ 16050849 (+) True G321221
XM_026925305.2 mRNA upstream 3545 15863147 ~ 15890456 (+) True sbno2a
XM_034297740.1 mRNA upstream 51612 15798191 ~ 15842389 (+) True LOC113533481
XM_026925405.2 mRNA upstream 211725 15667753 ~ 15682276 (+) True slc25a42
XM_026925001.2 mRNA upstream 227931 15659976 ~ 15666070 (+) True armc6
XM_026925561.2 mRNA upstream 235325 15650621 ~ 15658676 (+) True LOC113533414
XM_034314563.1 mRNA downstream 6658 15929947 ~ 15936773 (+) True gpx4b
XM_034314823.1 mRNA downstream 15606 15938895 ~ 15984585 (+) True pip5k1cb
XM_034314825.1 mRNA downstream 15606 15938895 ~ 15984585 (+) False pip5k1cb
XM_034314824.1 mRNA downstream 15606 15938895 ~ 15984585 (+) False pip5k1cb
XM_026925782.2 mRNA downstream 15606 15938895 ~ 15980498 (+) False pip5k1cb
TU380255 other upstream 23006 15869016 ~ 15870995 (+) True G321088
TU379509 other upstream 1065230 14827265 ~ 14828771 (+) False ly97.3
XR_004580321.1 other upstream 1998336 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 1998336 13837433 ~ 13895665 (+) False LOC113533270
TU378000 other upstream 3121134 12765055 ~ 12772867 (+) False G319170
TU380359 other downstream 6663 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 177244 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 188747 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380434 other downstream 208046 16131335 ~ 16132364 (+) True G321257
trnag-gcc_18 other downstream 260783 16184072 ~ 16184142 (+) True trnag-gcc_18

Expression Profile