RNA id: XM_034314763.1


Basic Information

Item Value
RNA id XM_034314763.1
length 7789
RNA type mRNA
GC content 0.45
exon number 12
gene id ankrd12
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13949726 ~ 13985056 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGCATGTCCTGCCCCAGCTGAGCGCACGCAAACCTTTTTAAGCGCTGCACGGAGCTCGCGCGATCACGTGACCCAGCTCGTGCCAATGAGCGCGAGGTTCGCGTGTTTTTGCTCGGCTTTTCTTAGCGACGACCAGCGATGTTTTCAAACCGAGCCGTAAGCTGGAGAGAAACGTCACACAGTCGTAGGTTAATAACCGTTTTTGAGCATTTTATTCAGCAAACCGTCttcttgtgaaaaaaaacagttggtttttttgtttgtttcgtcGCGCTGGCCTGAAGTGGAGCTCGAAAGGCATTGCTTACGGCCCATGATGAACCCCGTGAGCCGTAGCTGCCACAGCTAGTCAGAAGCTGCACCATGGCCAAGCCGGGGACCGACAGAGATGGAGCCATGGTGGAAAAGACGACCGGGAAGAAGagTAAAGATAAAATCTCCCCATTTACCAAAACTCCGAAGCTGGATCGGAGTGAGATTATGGGGAAGGAGGGGAAGCCGAAGTCTTCCATGAAACGCAAGCTCTCCTTCAGTGTCAGCCCTCCCCGTAACGAGGAGCGGGACTCAGACACAGATAAAGATGGTCCGGATAAAAAGAGGGTAAAAAAGGAGTCCGGGGGTAAGAAGTCCACCCCTGTGAATATTTTGTTCGGTTACCCACTGTCTGAACGCAAGCAGATGGCCTTGCTGATGCAGATGACAGCAAGAGACAACAGTCCAGACACCACGCCGAGCCACCCCTCCCAAGCTCCAGCAGTGCAGAAAAAGACGCCAAATAGCTCCACTTCGCGTCAGAAAGACAAGGTGAACAAGAGGAACGAGCGCGGAGAAACACCGCTGCACATGGCTGCCATCAGAGGGGATGTCAAACAAGTCAAGGAGCTGATTGGACTAGGGGCGGATGTAAACGTGAAAGATTTTGCAGGTTGGACACCTCTGCATGAAGCTTGCAACCTTGGTTACTATGATGTAGCAAAGGTTCTTATTGGTGCAGGAGCTGAGGTGAACACACAAGGATTGGACGATGATACCCCTCTTCATGATGCATCCAGCAGTGGACACAAAGATATTGTGAAGTTACTCTTGCAGCATGGAGGAAATGCCTTCCAGGCAAACAAGAGAGGCGAGCGGCCGGTGGACGTTGCTGATTCTCAGGAGGTTGAGCAGCTACTGAAGGGGGAGATCCCATTGTCTGACCCAGATGACAGCTCTTCAGACTCTGAGGACCCTCCATCAGTAAACCCCTCCAGTGTAGATGAGAATATGGAGTACTCAGACACTGAGAAGGACTCTGATGGCAAATCGACCACAGCAAAGGCCACATCTTCAGTGTCTGGTGTGGATGAGTACGAGTTCaaagatgaggaagaggaggaagaccTGAGCAAGGCCCTAAACGACAGACACATTCTGAGACGAGAAGCACgtcagaaagagaaggaggaaaaagagcAAAACCATTACACACCCAAGCAGTCCAACAAGAGCGATCAGACAATGTCAtcctgcaaaataaaaaagccaAAGTCATCCCGAGTCCTCTACTGCAGTTCAGAGAGTTCAGACGATGAAATGGAGGCTCCATCAGAACGAAAGTGTTCACCAACCAGGTCACTCTGCAATGATACTCACAAAACAGAGAGcaggacaaaaagagaaagctTAACCCTAACACCAGCAGAAAAAGGCAAGgcaaacaagaagaagaacaagagcCAAAGCAAAAACAAGGAAAATCAAGAGGTTCAAGAGgatggaaaagaaaacagcaagtCTCTTCTGTTTTCTACAGCGACAGTGTCTGACAGCTCTGATAAAAGTGTTCGGGAGGAAGACTCTTTCAAAATGTCCTTCAGCCCAAAGGACGATTCGTCAGTGCACCTCTTTCACTTGTCGGCTGTGAAATCCCCAAAGCTCAGTTACAGCCAAACTGACAAGCAGATGACTCCGTTAAAACAGGAAAATGCTAAGACTTTTGTCTCCATTGGAGATGGATCCTGCCCTATAGATGGTGTCAAGTTCAACCACTACACAGATTCTGACTACACAGAAGGTTCCAGCAGTAAGAGCTGTAAGCACAAGGACAAAAGCAAACATCACTATAAAGAACACAGCTTGGATGGAGATGACAGAAGCTCCAGTCCTTTTAAAGATGCCAGTTTAAGCAATAGTATGGATGGTTCTGAAGGAGCCTTCAGGAAGGCTGACAAAGATGGAAAGGTTGTCAAGAAGCATAAGCTAAAACACAAGGAAAAGGACAAGTACAGGAAAGACTATGAGTCTGAGAGAAATCGGCATCGCCAGAAAGAACTACGGAAAGATGGACATAGGAACATGGAGTTTGACCGAGAATTTTGGAAAGAGAACTTCTTCAAAAGTGATGAGAATGAAGAACTTAAAGGGAAATGTGAGACACCAGGCAGTTGTTCTCCTCAGAAGTCCCTTGACTCATCACctattaaagaagaaaaagcaacattaaaagacaaacatttggtctgcaacagcactaaggagagaaaacaaaaagatgagCGTGAGAAAGACAAActcataaaaaaagagaagaaagaggtgGCATATAAAGAtgaaaaaggaggaaaggaTGGGAAAGGGGCTGAAAATGATGACCGGTCAGAAAGTCTTAACTTGTTACGAAAGCCTGAAGACACTCTTCCAAGTCCTTGTGTAAAAGAGGAGGTAGAAGACAAGCCTCTTACTGGAAACTTGGTTGATCACAGTCAGCTGGAGACTACAGAGAAGAGTTCTCGAGAGAAAAATGATAAACGGCTACTCACAAAGGACAGAGATTctgaaaaatgtgagaaaaaacaggcagaaaaagaaaagaagtccAAATTGGAACATTTGTTAGATAAATCTGACCCTCACAACTCTACAGATCGGTGGAAAGAGAGGGACAGGTTAACAACCACATCTAATTTGTCTGGTGAGAAGAGTCACAAGGAAAGTGAAAAACTTAAACCGGTGCCTGTTACTAAAAAgcatgaagaaaacaaaaagagcaAGGACAAGCTTGACAGAAGAAGTGAGAAAGAACGGCAAGAGAAAGAGCATTCCAGTGATCACCGGGACAAGGATAAAATGAGttcagaaaagaaaggaaaggctCCTGAGAAGAACAGTGATCATAGCAAAATTGATCGaattaaagaaaaggaaagagaaaaagacaaagagtctgacaagaagaaaaaagaaaaatcaaaagaaGCCACTCTCTCTTCCTCAAGTTCTAATCTCAAATTTCTTTTGGAAGAGAAAAAGGGGTACACATCCGAGAGCAATAAAACGGTAACCTCAAAATTAAAAGAAGAGGTTATGAAAACCCCTGAGAAAGACCGAGACAGACGGGAGAGGGATCGAGATTTGGAAAGGCATCGGGACCGGGACCGAGAACGGCACAAGGATAAAGAGAGATCACAGCAGAATAGGGATAGCAAACTCAGTAAAGCAAGGCCTGTTGAGTCCGAGTCAGACAGGTCCAAATCCAAAGCCTCACCTGCACAAAAGGAAACCCGTCCCAAAGAGAAAAGATTGGTTAATGATGACCTCATGCAGACCAGCTTTGAACGAATGCTTAGCCTGAAGGATCAGGAGATTGAGCAGTGGCACAAGAAACACTTGGAAAAGATCAAGCAAAAAGAAAGGGAACGGCTGAAACAACGACCAGGAGCTGACTCTGGGAAGcagaaaaacaaagataaaGCAAAAATTTCCACTTCCAATGAACCATGTGCAAACAAAGAACTCTTGCGCTCCAAGAGCTCAGAAATCCCAGAGCCTTCCAGTCGTGAGAAGATCTTAAAGGATGCAACCAGTGGAAGGACGCTTTCGCTAGATGCAAAGAGTCTCTCATGTTTTGGAAAGGCTGGTCCTGTAATGGAAAACAGCCTTAGTCGATCTCCAAGACCTGACAGTGAACGATCTGGTATCATGTCAAGATCAGTGTCCATGATCTCAGTAGCCAGTTCAGAGGATTCCTGCCaggctagcatgctaacacccAGGCCCACTGAGTATGACTCGGACCTCAATTTGGAAGCATCCGACTCCCAGCCACCTTTCCTCCAGTCTTCCCTCACAGTTCAGTCCTCCAGATCACCAGTTGTCAACGATAAAGATACAAACAGTCTTCCTGACATAGCTCCTGGCAATCGAACACCACTGTCAAGCAGACTTGCATCCCCTTACTTAAGAGCTGTCCTGGATGAGGATGCTAAAGCTGGTCCATGCGAACCAGACAGACTGTCTGAAGAATGTCAAAAAGTTGGTGATGTAGCATATTCCAATGAGGAGCCTAGTAAAATACACCAGACTGAAGCCAGTGGAGCAGTCACACAGGAAAGTCTTAGTATTCACAACCCACTGTCAGTGTATCTCCCTTGCGCTGTACCTGAAGTTGAACATTCTGTTGGTGTTGAGGATGCGAGTGGCAGTTCAAACAACCAGTTTGCATGTGTATCTAACGCTCGAGATACTTCAATAAAGGATCTCACAGGTCAGCAAACTAGCCTTTCACAAGCCAGCAGTTTGTTGCCAACTACAGTAGAGGTCAGCAAGCTAAACACTGATACTTTACCAGAGCGAAGTGGACAAAATCAGCTTGACAGCTCTGACATAGAAATGACAGATGGCTCAAACAAAAATTCCTCGTTAGCACCTGTGTCCCAGGTTGCATCAGCTGCATCCTCACAGCCAGAACAAAGCTTCACCAGCAAAACACCTATGCAGTCACTTAACCCGAAGTTGGATTCTGTCTCAGAACCCAATATTGACCACCCAGCAAGGACAGACGTTGATTTGAGACTAGAGCAAAGGGCGAGAAGTCTATCAATGGGTCCTGAAAACAGAATGGAGGACAGATGTATGGAAAATGTTTCTAGTGGGAGCAGAATGGATTGGACAACTAGCCAAGCTGCATCCATTACCTCTTGTAGGATCAGTTCTGAGGAGTCTTCTAAAACACTGCCATGTACAGCTAGTGTGGTCAGAGATTATCAGCAGGTTACAGACAGGATTTCAGAAGATGACTGTAAGTCAGTTCTCTCCAATGAGAATGCAGGTGCAGCTGATTCACAGCTGGAGAAAAATGAACATAGTTTGCCTGTCCCTTCAATTTCAAATGTCCCTCACAGTGCTAGTCCTGAACAGACATCTGAAGAGCCAATGGAAGTATCAAGGGAAGAGCCAGACAATAGCCAGGTTGTTGGTGAGACACAAGTAGAGAAAGTGGTGGCTACAGAGGATGCGGCTCAAACCCAGCCTCACACAGATGCTAAAGCAGATGTTGATGTGGAGATGCCAGACCAGCTTGCTGTTGAAGAGAAACCGGCAAAACCAGGTACTCCAGCAGAAGGAGATCAGAATCTGGGCTGCACTGGGGTTCAACTTGATTCTCAATCAGAACTAACCAGTGGAGCAACTTCTGGAAGCTCTTCTCCATTGTCAATggcagacagagacagtgatcCAACTGGAGCGAGGACAAAAGTGAAACCTCTGGATGATGAGGGCGACATCCAGGTCACTCATCCAAGAAAACGAAAGATGCACAGAGTTTCTCCTTCAACCCAAGTCAGCCTTTCAGCCCAGCAGATTAAGGAAAAGACCCAGCAGTCTTTGGCAGCAATCGTGGACTCCCTAAAGCTTGAGGAAATTCAGCCCTACCAGACAGAAAGGGCCAATCCTTATTATGAGTTTCTGCACATCCGCAAAAAGATTGAGGAGAAGAGGAAGGTGCTATGTAGTGTCATTCCTCAAGCACCCCAATACTATGATGAGTATGTTACATTCAATGGGTCCTACTTGCTTGATGGGAATCCTCTGAGCAAGCTCTGTATTCCAACAataACACCACCACCCTCACTACCTGAACCACTAAAAGAGATGTTCAAACAGCAGGAGGTTGTGCGCATGAAACTACGCTTGCAGCACAGCATTGAAAGGGAGAAGTTGATTGTATCCAATGAGCAAGAAGTCCTGCGTGTCCATTATCGTGCTGCAAGGACGTTAGCCAATCAGACACTACCCTTCAGTGCTTGCACGGTCTTGTTGGACGCTGAAGTATACAACATGCCCCAGGATGTACAGGGAGATGACGGGAAAACCTCAGTGAGAGATCGGTTTAACGCAAGACAGTTCATGTCTTGGCTTCAGGATGTGGATGACAAATTTGACAAGTTAAAGACGTGTCTCCTGATGAGGCAGCAGCATGAGGCAGCAGCTCTTAATGCTGTACAGCGATTGGAGTGGCAGCTGAAGCTACAGGAGCTGGACCCTGCCACTTACAAATCAACCAGCATCTTCGAAATCCCAGAGTTTCACATCCCCCTTGTGGAGGTCAACGATGACTTTGACCTCACCCCGATATAACAGCAGTGATCCAGTGCTCGGATCAAAAAGAACTTACAAGGCTCATCTCTCCAGTGCTCGAGAGGAGTAGAGAAACACAAAGCACTTGTTTTTGGGCAAgctgcagtatgtgtgtgtgtgtgtgtgtgtcgtgcaGTCTTGCACAGTATGATCAGACactccagagaaaaaaaaaatttaataataagagTGACACAGAATTGAATAACAGTCCTCCATCACTGCAGATTAGAAAgtctgcagtatttttttttttttttttttaagtcattcTCGATAGGAGTGTCTGCCAAAAGACTAAACGCACATGCTACGTTTCTGTACCGGGTCCAAGGCTTAGCATTGCGTCCCTGAAGGTCCAATTACTTTTCTCTGTATCAGCTCTTGTTTCAATACACTTACCTGCTCCAGATGCACTTCTGTCATAAGAATCCAGTGCAAAACATAGATTCTTAAGGCTGCTGGCTTTAGGTCCAAAGTGAAATGCACTTAAACTCCCTGTTTCAGAACAGTAGAACCGCAGGCAGGCAGAGCTGCATGGAGGAGATCCAGCCAGCAGAGGGCGATGCCTACCCTCAATGATCAGAGTGAGAAcatgagagaggtgagagagggaaaagTTAAAAGAAGCAAACACTTTACCTCTCCTCTGACAGAACAGAGAGGTCTCGTTCCAACTCGTTTCAAAAGTGAGTGTTCATGATGTATAGATTGTGctcttcattcttttttaacttattttataCATACTGATTGTGCATTTGTAAATAGccatgtaattattatttttaacttgtaaaaagagaaaataacagaaagGAAGTTAATAGATATTTTGATTGTAAACTTTTTGTCAAATGTTTAATGGACCAAAGTTGGTTTTATATTGAGCGTCCTCTCTGTTGTTGATGTTGGCTTAACTCTTTAAGCATGTGTTTTTTGaattatgtttgttttgtttgtttcttcttcttctactacaTGTTTCCTCCTAGATTCATCACAGCAGGTGTTTTTTGACTTGTGATTTCTATGCTGTGCATGCGTTGCAGGTTTGTAATTCTTTTTCTGAAAGCTGTGCTGTGGTGAGGTTTATGTAAGTGGTCCTGCTTTTTCCCGCCTTTGTCGTCTCTTAGTAACACTCACTTCCTCTGTGTTGCCCGTTGTGTCTTGCGCACATTAAGAGAAAACAGGATTGATGTGTCTTCTCGTTAGAAAATGGAAACttacttttacagttttaatgtgAGATCACAACAAAAACGAAACCTATTTTTTACAACACGCCTTTTGAACGATGGTTCTAAAAATATgtctattttaatatttacttgttACAGGATAATGTACATAATTGTAATATATACCTGAATAAATTTTATTGGTTGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576915.1 lncRNA upstream 30580 13911571 ~ 13919146 (+) True LOC117595739
XR_004576916.1 lncRNA upstream 30580 13911571 ~ 13919146 (+) False LOC117595739
XR_004576917.1 lncRNA upstream 39446 13904527 ~ 13910280 (+) True LOC117595740
TU378841 lncRNA upstream 40091 13908863 ~ 13909635 (+) True G319886
TU378818 lncRNA upstream 55285 13856965 ~ 13894441 (+) True G319867
TU378986 lncRNA downstream 32885 14017941 ~ 14018154 (+) True G320003
TU378987 lncRNA downstream 33773 14018829 ~ 14019036 (+) True G320004
TU378998 lncRNA downstream 95193 14080249 ~ 14126913 (+) False zmp:0000000521
TU378999 lncRNA downstream 95193 14080249 ~ 14127006 (+) False zmp:0000000521
TU379021 lncRNA downstream 152606 14137662 ~ 14140523 (+) True G320032
XM_026925273.2 mRNA upstream 1934 13932646 ~ 13947792 (+) True ndufv2
XM_026925299.2 mRNA upstream 51812 13837433 ~ 13897914 (+) True LOC113533270
XM_026925301.2 mRNA upstream 51812 13837433 ~ 13897914 (+) False LOC113533270
XM_026925302.2 mRNA upstream 53985 13837433 ~ 13895741 (+) False LOC113533270
XM_026925219.2 mRNA upstream 114911 13820665 ~ 13834815 (+) True rab12
XM_026925092.2 mRNA downstream 3547 13988603 ~ 14003700 (+) True twsg1a
XM_026925567.2 mRNA downstream 21301 14006357 ~ 14015371 (+) True rnf126
XM_026925245.2 mRNA downstream 129718 14114774 ~ 14127012 (+) True zmp:0000000521
XM_026925244.2 mRNA downstream 129721 14114777 ~ 14127012 (+) False zmp:0000000521
XM_026925246.2 mRNA downstream 129746 14114802 ~ 14127012 (+) False zmp:0000000521
XR_004580321.1 other upstream 54061 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 54061 13837433 ~ 13895665 (+) False LOC113533270
TU378000 other upstream 1176859 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 2376829 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 2400538 11549115 ~ 11549188 (+) True trnai-aau_17
TU379509 other downstream 842209 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 1883960 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 1944896 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 2115477 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 2126980 16112036 ~ 16120033 (+) False si:ch211-178n15.1

Expression Profile