RNA id: XM_034314803.1


Basic Information

Item Value
RNA id XM_034314803.1
length 9119
RNA type mRNA
GC content 0.51
exon number 55
gene id atm
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7145401 ~ 7203200 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACAGCACACAGAGCAGTAAGCGGAGGCGTATGGAGCTCGGCTGGGAAACACTGAGGGATCACCTACAACCCCATCACAGCGACTTCGACATGATACCTTGCTACAGGTGACAGCTGCTCTGGCTTCTAAGTACCCCTCCATGCTTCCTGCCCATGAGCTGGCCCCTCTGCTATCTCTGCTGTGCCAGCTGCTGGGAGAGCAGCAACGTCGAGGAGAGAGGGGTCCGTACGTGCTGCGCTGCCTGAAGCAGGTGGCTCTGTGCCAGGCCAAAATCTCAGGAAAGAGCCAGGCTCTGCCGGCGGAAGTAGGCCGGATTTGGGCCAGAGTGTGGGCGCTGGCAGTGCGAGGCGTCAGTTCTGCCCACACCGAGGCTCTGTGCCTAGAGCTGTTACAAACCCTGGTGCAGTGCCACCTTGTGCCCGTCGACAGAGAATTCTGGAAGCTCTTCTCTGGTGGCGTGTGTAAACCATCTGTTGTTTCGGCCCTCAGCCTCACCCAGGCCTTGTCTAAGTGCTCGGTTCCGAAGAGTGTGTACAGCAGTGAGTGTTTGTCATCGGTGCTGCTGGATGCCGGCTCTCCGCCCTTGCTGAAAGAAGCACTCATTGACTGGCTGCTTATGAATGAGCAGAGTGATGAGATGGAGGACAGCGTCAAGCTTCACCCAATCATCTGCAGGAATTTTCCTCTAAATCTTATCCCGAGAATTCTGGTGGCTTTGACGCTGAAAGATACCGTGGCAGGAATGACGTTTCTGATGAGTTCTCTTCAACCAGAGTGCATATCTCCTGCGGATCAGCCTTCGGAAGCTAGAACCCTGCTGAACGACATTGAGACGCTGTACCTGCAGGTCAGTTTTGATGACGTGGCCTCGCATTGCGCAGTCGAAGAAGACAGAAGTCGAACATGTCGAGAAAAGCCTCAGCTCACAGTCATCGACTCTCTCAGGACTCGAGTGGAGCAGAATCTTCAGGCTGTAGCTGACCATCTCCTCAACTCCTACTCTCCTGACactCCTAATACTTCCCTTGCGTGTATGGTGTACTGCTTGAGGCTACTTACTGGTACCCTGGGTGCCTTTATCTGCATCGGAGTCCTTACTGAGGAAACTGCGTGTCACACTCCTCTCTTTCAGAAAGCAAAGACTATAGCGCAGGACCTGAGTAATTACATCACCTCTGCAAAGACCAAGTTAAGTGAAGATGAAACTCTGTCCGTGCTTAAATCTGTGATGCTGTTGTACTCAGAAAGCATCAGCACGAAGAATAAAGACAGCGTTTCGACAATCTCTCGCAGTTTAGTCATGAAGGCTGTCCCCGCTCGACTGCTGAGTGAGCTGTCAGAAATCTGCAAGCTAATGCTAGGTAACTCTGCTAAAAGAGACAGCGCAGGGGTTGATAATGATCCGGATGACATAGACGTGAGCAGAACTCAGATGGAGGAGAACCCACAGGAGGAAGTCGATCTGTTTGATGATGGAGACAGCGCACAGCATGGCAACAGCAGAACACAGATGCTTAATACTGACTTGGCTGATTCTCAGCATGGCTTagGAGCGAAGAGCCCTCTATCACAGGAGCATCTGACCAAACAGGACCTGGCCTTCCTAGACACTCTGGAGTTCCTTTCACTGTGCGCCTCGTTTGAACTCAGTACCGGACTCACCTTTAAACCCCTGGACCTTCGACGCAAACTGCTGAAACTTTTGGATCTGATGGACTGTGCCAAACCGCTGCACCTCCACATGTATCTGGTTCTGCTGAAGGTGCTTCCAGCAGAGAGGATGTCTCTGACGGCTGAAGAGTTTGATTTGCTGCTCAGACCTCTTGCggaCATATGTTCACAGTACCGCCAAGATCAAGAGATGTGCTGTACCATCCTTTTAGCGCTGCTGCCGTGTGTGCGCTGCCTGCGTGGAGTACAGTGTCCACCTGAGCAGGGCGAGGACATGGATCACGTTCGGGGTACGCTGCTCCAAGTGGTCTCAGGCTTCTGcaTCTTGGGTAAAAGTGGCAAATGCACTTCAGCTGTAAGGGCAGCACTGGGACGCTGTTTACTTGCCTTAATGGAGGTTGACCCTTGCTGTAAGTGGGTGGTCTTATCTCTGAGGGGGGAGGAGCTTCCGGCATGTGCGGTTTTGCCCTCACACCTTGCAGACCCCCACCACCATGTTCGCATGCAAGCAGCCATGAATGTAGAAAGACTGTTCTTGGAGAAAGTAGGTTGGGgtggagagaagaagaagatgctCCCACTAAAACACCAGCAAACAGCCTTTGAGAACGTCTACCTGAAGGCACAGGAGGGGACGAGGATCCAGAGAAACGAATCCCCTGAAGACCTGCCTGATGAGACCTTTAACCGTCGGGCGACTCTGCTGAAAAGCCTGTCCATGGTGATGTGCTGCAGCCCTGTGTGTGAGAAGCAGGCCCTCTTCGCCCTCTTTCAGTCCTACAAGGAGAACAGCATCGAGGAGAACCTGATTAAAAAGGTTTTGGCGAGTGTTTCTCTTACTCTGGGCTACAGAAGCTCTGAGGCGTTTGTCTGCTCTCATCTGAATTATCTGGTGGCTGAATGGCTGAGCCAGAGACAGACGGACACCAGCTACACGCTACAGTCCTTCCCTTATACGCTTTTAAACTGCAGCAGTCTGGAGGAGTTTTACAGGTCATCGTATCATGTTCTTATCCCACGCTTGATCTTCCTGAATGACTTTGAGCAGGTGAAATCTATTGGGTGTCACCTGAAGCAAGACTGGAGGCAGCTAGTGGCTAAGTGCTTCCCGAAAATCATGGTGAACATCCTGCCCCACTTCGCCCTCCCCAGCCATGACTCACAGGCggcagagcagagagagaaagcgcaCCACGTTTATGACCTGCTGAAGGATGACCAGTGCCTGGGGAAACAGCAAATCGACAGTCTGATATGTGGCAACCTGGCAGACATCGTTGTTGAGCTGCTGATGACGCTGTATGAAGGCGCAGGATCAGGCACTGCAGAAAGAGGAGACCTGCAGAAGTTTATTGGGGAGTTGGATCCTGCTCCAAATCCGCCTTTCTTCAGCTCACACGTGATTAAAGCAACGCTAGATTACCTCAGCAAGTGTCATAGCACCAGTCACAAGTCTCTGGTAGCCATACTGTCCAAGACTCCGATGTCCATACAGAAGATTCTGACCTCAGTTTGCCAGCGCGCAGCCGAGACCACTAACGCCTACGAGAGGCACCGCATCCTCATGATGTATCACCTGTTTGTGAACCTGCTGCTGTCTGAGGTTAAAGATGGCCTGGGTGGAGCGTGGGCCTTTGTGCTCCGAGACATCATCTACACCCTTATGCACCACATCAACGGCagGTCAGGTCATCAGGACGAGGTCTCTGCGCGCAGTCTCGCTCTGTGCTGTGACCTGCTCACCACCGTGTGCCAAACAGCCATCCGCTTCTGCAGCGATGCGCTAGAGAGCCATCTACAGGTCATTGTAGGAACTCTCACTGCACAAGTCACCGAGCATCCGGCCATATCTCAACAGGTGCTGAGTCTGCTCAAGTTTCTGGTGATAGAAAACCCAGATGACGGGTGTCTAAAGAGAGCAATTCCTTTGCTTGAGCCTTTTCCTGATCAGCCGGCATTCGCAGAGCTCCGAGCGGCTCAGCACGCACTCAAATACAGCTCCAGAGCCTTCACCCTCAGACAGGAGATTGAGCATTTCTTGTCTGTGACGTCATGTGACTCGTTACCTCTTACTCGAATGGAGGGCCTAAAGGATTTAAAGAGACAgttacacactcacaaacagcAGATTGAGCAGCTGCTGAAAGAATGTCATGCTGATCCGGCCAGCAGTGTGCTGGTCAAGCTGGTGCTGAACCTCCTGCAGCTGTGCAAACTGGCAGCCAACCATCCTGGAGGCAGAGACATCTTAGAGGCTGTTGGGGGTTGCTTGGGAGAACTCGGGCCTGTGGACTTGTCTACTATTGCACTGCATCATGGGAAAGATCAGATTTACACCCAGGCAGCTTCTCTTTATCCTGATGTTCTTCATCAGTGGATCTCCATCATCCTCAGCTGCATGAACAACGCACTGACGGACCACAGTATTTCTATCCGCCaggctgctgctgtgtgtttgaagGACATTTTGGCCACTGCGTCCGGTTTGGAGTTCTGGGAGATACACAAGAGCCAGAGAGACCCAATGCTGCTTTACCTGAGTCCTTTTCGCTCAGCAAAGAGAAAAGAGCAGATGGTGAGACCGGAGGTCACGTCAGCTTCCAGAGATCGAGTGGACAGTGCAGAGTTGTGGTCAGCGCAGCCTGGAAAACACAATGAGTGGCTGAGGAACCTGTGCATGGCTCTGCTGGACAGTGGAGGGGTCTGCAATGAAGCCCTGCTCATGACCAGAGCCCTTTGTGAGGTGAAAACAGATTTCTGCCAAAAGATGCTTCCCCTCTTCATCCATGACATGCTGCTGGGAGACAGTAATGGCTCATGGAGGGAACTTCTCTCCACACACATCCAGCGCTTCTTCAGCAGCTGCTGCAGACCGGGCACTTCCGGCAGTCGACCCACCACCCCCATGCCCTCTGATTCAGGAGACACAGACGTTGGCGTTCAGGGCCAACCAGATAAATGTTCTCTGCGCACCATGCTAGCAGTCATCGACTACCTCAGACAGCAAAGACGACCACTGGGACCTAACAGTGCTGTTGAGTGTGGAACCGTGTGCGAGTCCAACTTCTGGCTGGATCTGAACTATCTGGAAGTGGCTCGAGCAGCACAGCTCTGCTCCGCCCATTTCACTGCCCTTCTGTACTCCGAGATCTATGTGGACAACATCCGCAACAGCATGGAAGAGAAGCGCAGAGCTCAATCCAGAACATCACGCAGGATCACGTTTGATGATAGCAGCCAAAGCCTGTCCATCGGCAGTATGTCTGAGAAGAGTATAGAAGACTCGGGCATGAGCTTGCAGGACATCTTGATTGAGGTGTACAGGAGCATTGGGGAGCCTGATAGCCTGTATGGATGTGGAGGTGGCAAGTTGATTAATCCTCTCACTAGAATCAGGACGTACGAGCATGAGGCCCTGTGGGGTAAGGCTCTGGCCTCCTATGACCTTCACGCCAATCTCCCAGAGGTGACGAGGCAAGTTGGCATAATGGAGGGTTTGCAGAATTTAGGGCTCTGTGGCATCCTGAACACGTACCTGCACGGTCTGAGAAGACACGGGGCCGAGTGGGCACCTGAGCTCCGAGAATTTCACTTCCAGGCAGCCTGGAGGAACACACAGTGGGAGACGGATGTGGATGAGAGGAGTGAGAAACTGAATCCTGGCTTCAACGAGTCTGTGTTCACTGCTCTACAAGCGTTGAAGGACAAAGACTTCTTCATGTTTGagcaaacactgaaacacaccagAGGCAGCGTGGTTGAGGAGCTCTGTCGTGGCAGTCTGGAGGCCGTGTCCTCTCTCTATCCAGCTCTACGCAGCTTGCAGATGATCGAAGAAATCCAAAGTGTCAAACAGCTTTTCAGtgaATCCACCCAACTGGACGTCTGCAGGAAGTGGCATCAGCATTTAGACCTGTTGACAGACAGTGATTTTAGCCTGGTCGAGCCAATCCTGGCTCTGCGTTCATCCATTCAGGAGACACTTCTCCAATGCGAGACTGACCCAGACAGGAAGAGGTTCCTGAGCTCCATCTATTCCTCACACCTGATGGAGCTGTGCAGACTGGCGCGCGCTGCAGGCAACACACAGCTAGCAGAGCGGGCGGTGTTTCAGATGAAGCAGCAGAACATGGCGAGTGTGAGCACCGCTACGTCCTGGGCGTGGCAGCTGGAGGAGGCTCAAGTGTTCTGGGTGAAGAAGGAGCAAGGACTTGCACTGGGATTACTCAAACAGATGATTGATAAGCTGGAGGATCTGGTGGACGTGAACCCTGCTGTGGTGCCGGTGTATGCCGAGTGTCTGAGATTATGTGGCAGCTGGCTGGCTGAGACGTGTTTAGAGAGTCCTGCTGTAATACTGGAAACCTAcctggagagaGCTGTCACTGTGGGCCAGGGCGGATCTTCAGAACCTAAACTGCAGAGGCAGAAAACTCAGGCGTTCCTCTCGCTCGCCCGCTTCTCTGATGCACAGTATCAAAGTATCAAGAACTACATGAGGTCATCGGAGTTTGAGAACAAACAGGCGCTGCTGGAGAAGGCcagagaggaagtggagctCATGAAGGAGAGAAAAGTTCATGATAATAGGTACACAGTGAAGGTGCAGAGGGAGCTGAAGCTGGACGTCCGTGCTTTGGACAACCTGAAGGCCGACCGCAGACGTTTCCTACTGAAGGCGGTGGAGAATTACACACGCTGCCTCGCGCTGGGTGAAGAACATGACACCTGGGTGTTCAGGCTGGCTTCACTCTGGCTGGAGAACGTCGACGCGAAGAACGTCAACGACCTGATGAAGGAAGGTGTGAAAAAGATCCCTTCCTACAAGTTCCTGCCTCTCATGTACCAGCTTGCTGCCCGCATGGGCACCAAAGTGTCCAATCCAGTCACTTCAGAGGATGTGGGATTCCACACTGTTCTCAACGAGCTGATTTGTAGGTCGTCCATGGAACAccctcatcacacactcttcatcatCCTCGCTCTGGTCAACGCCAACAAGGATGAGTGCTTCTCCCGCAGCCGTCTGTCCAGGAGCAGCGCACGGCAGCCTTCACCTCTGGACCTGGACAGAGCCGACGTGGCACAGAAAATCCTCAATGCGATCCGAAAGAAGAAGACACAGCTGATCCGGGGTATTGAGACCCTCTGCCACGCCTACATCACCCTCGCATACATGGATGCAAGCAAGCATAAAACTGAGAAGAAGGCAATCCCCATCCCGGCAGATCAACCCATCATGCAGATTAAAGATCTAGAGGACGTCATAATCCCCACGATGGAGATTAAGGTGGATCCATCAGGGAAATATGAGGATCTGGTGACCATCAGGTCTTTTAAACCTCACTTCCACCTGGCTGGAGGCGTCAACCTGCCGAAGATCATCGACTGTGTGGGCTCGGATGGTCAGAGCAGGAGACAGCTGGTCAAAGGGCAGGATGATCTGCGGCAGGATGCAGTGATGCAGCAGGTGTTTCAGATGTGCTCCACACTGCTGCAGCGCAACGCTGACACGCGCAGGAGGAAGCTCAACATTCGCCGCTACAAGGTGGTGCCTTTCTCTCAGAGGAGTGGGGTTCTGGAGTGGTGCTCTGGTACCGTCCCAATAGGAGAGTTTCTAGTGGACGCTCAGAAGGGAGCACACAAACGTTTTCGGCCTCAAGACTGGAGCAGCATGGCCTGTCGCAGGAAAATGATGGAAGCTCAGAAGATGGAATCTGACCTGAAGCTGCAGGCGTACATGGAGGTGTGCCAGAACTTTCGTCCCGTTTTCCGTTACTTCTGCATGGAGAGATTCCTGGACCCGGCCATATGGATGGAGAAAAGACTGGCATACACACGCAGCGTGGCTACTTCCTCTATAGTGGGCTACATCGTTGGGCTGGGTGATCGACACATCCAGAACATTCTGATAGACGAGCAGACAGCAGAACTGGTGCACATAGACCTGGGTGTTGCCTTTGAGCAAGGGAAGATCTTGCCCACTCCAGAGACTGTGCCCTTCAGGCTGTCCAGAGACATTGTGGATGGCATGGGCATCACTGGCGTAGAAGGAGTCTTCAGAAGGTGCTGTGAGAAGACCATGGAGGTCATGAGGAGTTCTCAGGAGGTTCTCCTGACCATAGTGGAGGTGTTGCTGTATGATCCTTTGTTCGATTGGACGATGAACCCACTTAAGGCCTTCTATCTGCAGCAGCAGGACGAGCAGGCCGAGCTAAACGCCACCCTCAACCCCACACCTGCAGGAGAGGAACCCGAAACCAACCGCAAACCCAGTGACAGTCAGAGCTTCAACAAGGTGGCGGAGCGCGTGCTGCTGCGGCTGCAGGAGAAACTCAAAGGTGTGGAGGAGGGAGCAGTGCTCAGCGTCGGCGGCCAGGTCAACCTCCTCATCCAGCAGGCCATGGATCCTAAAAACCTGAGCCGCCTCTTCCCCGGCTGGCAGGCATGGGTTtgaaacacacacctgctcttGAGTTGTGTTTCATTATCTGGTGTATGCACTTATTCGTGCTCATGCACACAGATAATAGCTTTGAGAAATGAACAATTTACtcatgtactgtatctgtatcatCAGGAATTCCTTTGAAAGGATTCTTTGCACTATCAGATACAGTGATATGGTTGTTTAGCACTTGTAagtacagctgagtgcaaaagtttgtatacccttgaatgaaaaaagaaatttaatcaaTGCCTTTAGTCTGCTTGGTTTCACAAATGTCCTGTGATTACTGCAATTACAAGACATTCTATGTGtatattaagatattaatactaaaaaaaaaaatccttctccCTTCCTGgatgtgattataaatattccCTAATAATCTATATGCCCAGATTTAGATCtttattactacttttttttttttttttttaggttcttcttcttttcacaTGGAAACTGTGGAACTGTGGGGGATGCAGACTTTTGCACTCTGCTGTATATAAACTGAATAAGCTGTAGCTCTAGCTTTGTCCCTGTTTGTCGGCTTCATGTTGTCATTTATGAGTTTTTCCTTTGTCccccctcccaaaaaaaaagaattataatcttatatttttGACAacccttgattttttttatacataggCCTATATACTTGTTATATACTGATGATTTGTTGAGAGAAAATGATCAAAGCTGCTTAATGTGATAGTACTTTAGTACTATCAACCCACATTTTAACAGTAGGTTATAGTGATTAAATCACATCAGGAGTCACATGCTTCCTTTAAGAGTACACGTATGAAATATCGGATGCAATCACGTTTGTCAAAAACGTTTAGAATGTTCCTTGCCCAACTGACTGTGATTTCACAATGACAAAATGCACAAACGTCTTCATGCCAAATGAAGTGATGATTGTTTTATAGTTCTGCTGTTTAAGAGGCTGGAAAATGCAAGTAATAAACGCAATTAAGTGTCAGGTTA

Function

GO:

id name namespace
GO:0000077 DNA damage checkpoint biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0016572 histone phosphorylation biological_process
GO:0090399 replicative senescence biological_process
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage biological_process
GO:0000723 telomere maintenance biological_process
GO:0006281 DNA repair biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374285 lncRNA upstream 25833 7127691 ~ 7129877 (+) True G316000
TU374244 lncRNA upstream 121904 7033565 ~ 7033806 (+) True G315968
TU374158 lncRNA upstream 220533 6934949 ~ 6935177 (+) True G315901
TU374147 lncRNA upstream 240169 6914261 ~ 6915541 (+) True G315894
TU374135 lncRNA upstream 261093 6894337 ~ 6894617 (+) True G315886
TU374593 lncRNA downstream 223261 7426461 ~ 7433424 (+) True G316288
TU374628 lncRNA downstream 301879 7505079 ~ 7505404 (+) True G316317
TU374657 lncRNA downstream 361886 7565086 ~ 7568068 (+) True G316339
TU374659 lncRNA downstream 361886 7565086 ~ 7568068 (+) False G316339
TU374677 lncRNA downstream 379132 7582332 ~ 7590920 (+) False crsp7
XM_026940849.2 mRNA upstream 146972 6997484 ~ 7008738 (+) True meis3
XM_026941503.2 mRNA upstream 173064 6971552 ~ 6982646 (+) True LOC113543373
XM_026941532.2 mRNA upstream 185762 6961944 ~ 6969948 (+) True ech1
XM_034297691.1 mRNA downstream 56072 7259272 ~ 7355018 (+) False dscamb
XM_026941410.2 mRNA downstream 56086 7259286 ~ 7394464 (+) True dscamb
XM_034314700.1 mRNA downstream 238904 7442104 ~ 7453708 (+) True LOC113543091
XM_034314701.1 mRNA downstream 238904 7442104 ~ 7453708 (+) False LOC113543091
XM_034314702.1 mRNA downstream 238904 7442104 ~ 7453708 (+) False LOC113543091
TU374286 other upstream 20209 7133459 ~ 7135501 (+) True G316001
XR_004580329.1 other upstream 211102 6937340 ~ 6944608 (+) False LOC113543138
TU373737 other upstream 928470 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 1258880 5894504 ~ 5896830 (+) False shox2
trnat-agu_13 other upstream 1936092 5219545 ~ 5219618 (+) True trnat-agu_13
TU374748 other downstream 492334 7695534 ~ 7695919 (+) True G316413
TU375134 other downstream 1060139 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 1065509 8268709 ~ 8269198 (+) True G316745
TU375607 other downstream 1608757 8811957 ~ 8812820 (+) False LOC117599964
TU375892 other downstream 2209123 9412323 ~ 9415164 (+) True G317390

Expression Profile