RNA id: XM_034314805.1


Basic Information

Item Value
RNA id XM_034314805.1
length 1579
RNA type mRNA
GC content 0.52
exon number 10
gene id atm
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7145401 ~ 7203200 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCACTGAGTCCTTATATAGGTGCACTCAATAGGCTTTATCGTAAGGAATTCTGTGCCCTATCCAGCTATTTCTGCTTGATTTAGGATTCAATCCGAGATGAAGAAGAGAGGAAGGCGGGTTTTTCTTCACACGTGTGCGTGAGAGTTGGATTCGAGTtggcagagagaaaacagaaaataaacaaactgtTTTTAAAGCCAATGGCAGGAAAATGAGTCTGGTACTGAATGAGCTGCTGCTGTGCTGCAGAGGACTGGACAATGACAAGACCACTGAGAGGAAGAAGGAAGTTGATCGTCTCAGGAGGCTTCTTCGGGATCCTGAAACGGTGCGGGAACTCGACAATGTGTCCACCAGCAAAGCCTCGAGAGGCAGCACCCAGCTCACCTGGGATgctgtgttcagGTTCTTGAAGAAGTACCTGCAGAAGGAGACGGAGCTCCTGAAGTCGGGCAAAGTGAACGTCTCAGCCACCACTCAGGCCAACCGACAAAAGAAGatgcaggagatcagcagcctGATTAAATTCTTTGTCCGATGTGCCAACAAACGAGGGCCGAAGTTAAAGTGTGCAGATCTGCTGGCTCATGTGGTGGAGGTTCTGCAGAGCTCCTTTAGTTGTGCTGCGTACGGAGAGGACTACAGCAGCATCCTGCTCAAGAACATCCTCTCTGTCCGCAAGTACTGGTGTGAGATTACTCAGCAGCAGTGGCACTGTCTGCTGGATGTGTATTGTGGACTTTTCACCGCATCCAAATCCATAAACCGGGTTTTAGTGAGCAGGATCATTCACACTGTGGTTCAGGGATGCTGCCTTCAGACTGACGGcttgtcacacacactcttcagctTTTTCTCAAGAGCTCTAAGTAACACCAGagcagagagacagctgCAGGTGCTGGAGCACCTGATCTCCGCTCTGAACGTCTTCCTGCGCTCCGTGGCCATGAACCGCAGGAGACGAGTGTGCAGACTCGGAGAAGAATTGTTTCCTTCCATCCTGTACGTGTGGAGCCAGATGAGGCCCAGCTCCAGTCTGAAAGAGGAAATGGTGGAGTTCTTTAACATGCAGCTCAGTGTGCATCATCCCAAAGGAGCCAAGACCCTGGAGACGGGTGCCCACGCAGAGGACTGGGCGAAATGGCAGAGTCTCCTCTACAGCCTGTACGATGCTCTGGTGGGGGAGATCAGCCAGATCGGCAGTCGCGGAAAGTACGCTACGGGTTCTCGTCATATCGCTGTCAAAGAAAACCTTATTGAACTGACTGCAGACATTTGCCACCAGCTGTTTAGTCAGGATTTGCGTGTTGTGTTGAGGGACAGCACACAGAGCAGTAAGCGGAGGCGTATGGAGCTCGGCTGGGAAACACTGAGGGATCACCTACAACCCCATCACAGCGACTTCGACATGATACCTTGCTACAGGTGACAGCTGCTCTGGCTTCTAAGTACCCCTCCATGCTTCCTGCCCATGAGCTGGCCCCTCTGCTATCTCTGCTGTGCCAGCTGCTGGGAGAGCAGCAACGTCGAGGAGAGAGGGGTCCGTACGTGCTGCGCTGCCTGAAGCAGGTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374285 lncRNA upstream 15524 7127691 ~ 7129877 (+) True G316000
TU374244 lncRNA upstream 111595 7033565 ~ 7033806 (+) True G315968
TU374158 lncRNA upstream 210224 6934949 ~ 6935177 (+) True G315901
TU374147 lncRNA upstream 229860 6914261 ~ 6915541 (+) True G315894
TU374135 lncRNA upstream 250784 6894337 ~ 6894617 (+) True G315886
TU374593 lncRNA downstream 270232 7426461 ~ 7433424 (+) True G316288
TU374628 lncRNA downstream 348850 7505079 ~ 7505404 (+) True G316317
TU374657 lncRNA downstream 408857 7565086 ~ 7568068 (+) True G316339
TU374659 lncRNA downstream 408857 7565086 ~ 7568068 (+) False G316339
TU374677 lncRNA downstream 426103 7582332 ~ 7590920 (+) False crsp7
XM_026940849.2 mRNA upstream 136663 6997484 ~ 7008738 (+) True meis3
XM_026941503.2 mRNA upstream 162755 6971552 ~ 6982646 (+) True LOC113543373
XM_026941532.2 mRNA upstream 175453 6961944 ~ 6969948 (+) True ech1
XM_034297786.1 mRNA upstream 175870 6961943 ~ 6969531 (+) False ech1
XM_034297691.1 mRNA downstream 103043 7259272 ~ 7355018 (+) False dscamb
XM_026941410.2 mRNA downstream 103057 7259286 ~ 7394464 (+) True dscamb
XM_034314700.1 mRNA downstream 285875 7442104 ~ 7453708 (+) True LOC113543091
XM_034314701.1 mRNA downstream 285875 7442104 ~ 7453708 (+) False LOC113543091
XM_034314702.1 mRNA downstream 285875 7442104 ~ 7453708 (+) False LOC113543091
TU374286 other upstream 9900 7133459 ~ 7135501 (+) True G316001
XR_004580329.1 other upstream 200793 6937340 ~ 6944608 (+) False LOC113543138
TU373737 other upstream 918161 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 1248571 5894504 ~ 5896830 (+) False shox2
trnat-agu_13 other upstream 1925783 5219545 ~ 5219618 (+) True trnat-agu_13
TU374748 other downstream 539305 7695534 ~ 7695919 (+) True G316413
TU375134 other downstream 1107110 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 1112480 8268709 ~ 8269198 (+) True G316745
TU375607 other downstream 1655728 8811957 ~ 8812820 (+) False LOC117599964
TU375892 other downstream 2256094 9412323 ~ 9415164 (+) True G317390

Expression Profile