RNA id: XM_034314816.1


Basic Information

Item Value
RNA id XM_034314816.1
length 2821
RNA type mRNA
GC content 0.50
exon number 20
gene id mre11a
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 616718 ~ 677782 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTGAGAACTTCCGGGCCAAAAAGATTCATGTGTGTTCAATTTTAACcctatttaacaaattaaacagcTCAGCTGACGTAATCAACATGACGTCATCTGGAAACACAATAGATGACGAGGACACGTTTAAGATCCTCGTCGCCACCGATATCCACCTGGGTTACCTGGAGAAGGATGCCGTCAGAGGCAATGACACGTTCGTGACGTTCGACGAGATCATGAAGTGCGCGAAACAAAATGACGTGGACTTGGTGCTGCTGGGTGGAGATCTCTTCCATGACAACAAGCCGTCACGTAAAGCTCTGCACAGCTGCATGGAAGTGATGAGGAAGTACTGCATGGGCGATAAACCCATCCTGTTCGAGATCATCAGCGATCAGGCCGTCAACTTCGGGAACAGCAAGTTCCCGTGGGTGAACTACCAGGACGAGAACCTGAACATCTCCATCCCCATCTTCAGCGTTCACGGGAACCATGACGATCCAActggggcTGATGGTCTGTGTGCTCTGGACGTGTTGAGTTGCGCTGGTCTGGTGAATCATTTTGGACGCAGCCGTTCGGTGGAGAAGGTGGAGATCAGCCCCTTACTACTGCAGAAAGGAAGCACCAAGATCGCTCTCTACGGCCTCGGCTCGATCCCGGATGAGAGGCTGTACCGGATGTTTGTTAATAACCAGGTGTCTATGCTCCGCCCCCGCGAGGACGAGAACGCCTGGTTCAATCTGTTCGTCATCCATCAAAACAGgaGTAAACACGGTGCCACTAACTACATCCCCGAGCAGTTTCTGGACGATTTCCTGGACCTGGTGATTTGGGGCCACGAGCACGAGTGTAAAATCGCTCCGGTCCGAAACGAGCAGCAGCTTTTCTACGTCACGCAGCCGGGCAGCTCCGTCGTCACCTCACTGTCTCCGGGGGAAGCCGTcaaaaagcacaTCGGCTTGCTCCGGGTGAAAGGCAGGAAGATGAACCTGCAGAAGATTCCTctacacacagtcagacagttCTTTATTCAGGACGTGATTCTTTTGGACCACTCGGATCTCTTCAGCCCTGAGATGCCCAACGTCACACACAAAGTGCAGGCTTTCTGCCAGCAgaagGTTGAAGAGATGTTGGaggaggcagaaagagagagactcgGAAACCCACTAACACCCGACAAACCTCTCATCAGACTACGAgtggACTACAGCGGAGGATTCGAGTCGTTTAGCACGATGCGTTTCAGTCAGAAGTTTGTGGATCGAGTAGCGAATCCTAAAGACATCCTGCATTTCATCCGACACAGAGAGAGTAAAGACAACGTGAAagaggaGAGCATAGATTTCGATATGCTCCTGTCTCGGCCGTCATCTGATGTTCTGCAGTTGCGAGTCGAGGATCTTGTCAAGGAGTACTTTCAGACTGcggagaagAACATGCAGCTGTCCCTGCTGACGGAGCAGGGGATGGGCAAAGCCGTGCAGGAGTTTGTGGATAAAGAGGAACGAGACGCCATCGAGGAGCTCATCAACTACCAGCTGGAGAAAACGCAGCGCTACCTCCGCGAACGCCACGTGGAGGCCACCGAGGAGAAGATCGACGAGGAGattCGCCGCTTTAGAGactcaaagaaaaacacagcagaggaggatgaagaagtGCAAGAGGCGATTAACCGGGCGAGAGCTCACAGAGACCACGCCGATCCTGTAAGAGACGCCGATTTCGACCAGTTAGGTGAACCAGCTGACGTTGCCATGGATTCTGATGAGGACGACGCCCCCATGCCGCCGGTTCGGGGAAGAGGGCGGGGCTCCAGAGcgagaggagggaggggccaaAGCAGTGCAGCGAGAGGAAGAGCgcgagGAGCTGGATCTCAGACGAGTCGAGGTGGGCGGGGCCAAAAAGCTGCTTTTTCAAGTCctgctaaaaataaatctataatggatgCGTTCCAGGCTCCGAGAGGATCCCGAGGTTCCACAAAATCCTACGaggagGTCGCTATAGAGGACAGCGACTCAGACGACGATGTGTCCTTTGTCAAGACGTCTCGGCCTGCAcagaaATCCTCCTCTTTAGCTTCCTCCAGTAGGCGGGGCTCCCAGAGTCTCAGCCAATCAAGTAAAGGAGTCtgctttgatgatgatgatgatgatgatgaGTTTGACCCGTTTAAGACAGGGGGTCATCGGGGTAGAAGATGACTGGATAAAGTTGACCTCCCTCCGCCTCTGCAgtccatcatccctccatcacgCTCTCATTTTTTGGTCTCGTTTCATTTCACCTGCTCGTTCAGTTTTCATTCTGCAAGAGTTTACTGCAGCACACAGCTGCTTCTGTCCATCCAGAGTTCACTCTAAAGTGCACATGAAGTTCACTCTAAAGTGCACATGAAGTTCACTCTAAAGTGCACATGAAGTTCACTCTAAAGTGCACTGCAGTTCGAGTGCAGATCTTTCAACTTTGAGATTTGGTCTGAGTTTTAATCAtcgtttttttcctccctttatctcctctctctctctctctctgtgtttaatcTGCGCTCGTGTTTATTCGTCCCCTCTGGCTCTCTGTGATGAATGTTACTCTTTCTCAGAAGAGTGTGTTCATGGAGCAGAGCGGAGGTCAGTGAGGACGTACTTCAGGATGCATGACGTGTTCAATAATAGAGTTAATTcagcatctttttttaatagcttttgatgatgtcagtgtCTGAGCTTTTGTTCTGTTTGTCCTCGTTTTCTCTCACTGATTTGTTTGAATCTGAACTCTGTTCATGTGTAAAACTTTATTCTCACTAAACTTTTTCATACTTCC

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0005634 nucleus cellular_component
GO:0030145 manganese ion binding molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0004527 exonuclease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369841 lncRNA upstream 39850 574241 ~ 576923 (+) True G312221
TU369833 lncRNA upstream 115384 496710 ~ 501389 (+) False atpv0e2
TU369918 lncRNA downstream 33712 711494 ~ 712297 (+) True G312280
TU369914 lncRNA downstream 36239 714021 ~ 717291 (+) False LOC113543349
TU369915 lncRNA downstream 37857 715639 ~ 759328 (+) True G312277
TU369922 lncRNA downstream 61681 739463 ~ 743129 (+) True G312283
TU370234 lncRNA downstream 143480 821262 ~ 822746 (+) True G312517
XM_034297686.1 mRNA upstream 55636 545670 ~ 561137 (+) True LOC113543345
XM_034297762.1 mRNA upstream 94747 505627 ~ 522026 (+) True LOC113543344
XM_034297763.1 mRNA upstream 94747 505627 ~ 522026 (+) False LOC113543344
XM_026940836.2 mRNA upstream 116435 496689 ~ 500338 (+) False atpv0e2
XM_034297775.1 mRNA upstream 128115 458579 ~ 488658 (+) False usp45
XM_026941468.2 mRNA downstream 6024 683806 ~ 694338 (+) True LOC113543348
XM_034297687.1 mRNA downstream 26996 704778 ~ 717278 (+) True LOC113543349
XM_026941295.2 mRNA downstream 45669 723451 ~ 727865 (+) True cbln2a
XM_026941377.2 mRNA downstream 142748 820530 ~ 847017 (+) True jph1b
XM_026941381.2 mRNA downstream 190939 868721 ~ 873766 (+) True rdh10b
XR_004576918.1 other upstream 304045 275159 ~ 312728 (+) False snap91a
TU369780 other upstream 423539 189539 ~ 193234 (+) True pnrc2
TU369781 other upstream 423539 189539 ~ 193234 (+) False pnrc2
TU369797 other upstream 441232 174238 ~ 175541 (+) True G312191
TU369775 other upstream 521848 93899 ~ 94925 (+) True G312172
TU370232 other downstream 142773 820555 ~ 838522 (+) False jph1b
TU370320 other downstream 451143 1128925 ~ 1131683 (+) False paxip1
TU370328 other downstream 454101 1131883 ~ 1136020 (+) False paxip1
XR_003404390.2 other downstream 1287958 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 1455432 2133214 ~ 2143313 (+) False tgs1

Expression Profile