RNA id: TCONS_00008056


Basic Information

Item Value
RNA id TCONS_00008056
length 585
RNA type nonsense_mediated_decay
GC content 0.49
exon number 6
gene id XLOC_004205
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 30365668 ~ 30508851 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAAGTTACAGACAAGTACTGAGACTGAGATTCCCTTCTGACGccgtatgtttgtttttttgctcttTTCTCATTTCGTTCGCGTCAGGGACCCCAGCAAATCTAACACTGACTGTCAGAGGTAGGAGTCCCCACGATGAACTCTAGTTTCGATCTGTCTAGGCGAAATCCGCAAGAGGATTTCGAGCTTATCCAGAGGATAGGCAGCGGGACCTACGGGGATGTTTACAAGGCCCGTAATGTCACTACAGGAGAGCTGGCTGCTATCAAGGTCATTAAACTGgagccagGCGAGGACTTCGCGGTGGTTCAGCAGGAAATAATCATGATGAAAGACTGCAAGCACTCTAACATTGTGGCCTATTTCGGTAGTTACTTAAGGAGGGATAAATTATGGATATCCATGGAATACTGTGGAGGAGGTTCGCTGCAAGACATATATCACGCATCCTTTAGTCTCCCAACCACTGAGTCGTATTTTGGCGATTGAGCTGCTGGACAAAGCGAACAACCCAGACCACTCGTCCTACACAGACCTGGACGATGACGACCCAGAGCCAGAGCCTCCAGTGTCTGTTCCACACC

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0008349 MAP kinase kinase kinase kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130329-1 Predicted to enable MAP kinase kinase kinase kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human MAP4K3 (mitogen-activated protein kinase kinase kinase kinase 3).

Ensembl:

ensembl_id ENSDART00000155877

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008053 lncRNA downstream 59421 30361628 ~ 30364805 (-) True XLOC_004204
TCONS_00008040 lncRNA downstream 462325 29961114 ~ 29961901 (-) True XLOC_004198
TCONS_00008036 lncRNA downstream 503224 29918315 ~ 29921002 (-) False XLOC_004197
TCONS_00008027 lncRNA downstream 662215 29760108 ~ 29762011 (-) True XLOC_004194
TCONS_00008025 lncRNA downstream 686979 29734578 ~ 29737247 (-) True XLOC_004193
TCONS_00008812 lncRNA upstream 691428 31200219 ~ 31202839 (-) True XLOC_004211
TCONS_00008813 lncRNA upstream 696134 31204925 ~ 31211308 (-) True XLOC_004212
TCONS_00008814 lncRNA upstream 1641427 32150218 ~ 32157526 (-) False XLOC_004216
TCONS_00008815 lncRNA upstream 1646163 32154954 ~ 32156318 (-) True XLOC_004216
TCONS_00008816 lncRNA upstream 1857121 32365912 ~ 32391388 (-) True XLOC_004217
TCONS_00008051 mRNA downstream 59379 30355442 ~ 30364847 (-) False XLOC_004204
TCONS_00008050 mRNA downstream 71893 30348273 ~ 30352333 (-) True XLOC_004203
TCONS_00008049 mRNA downstream 82795 30332959 ~ 30341431 (-) True XLOC_004202
TCONS_00008046 mRNA downstream 265617 30107447 ~ 30158609 (-) False XLOC_004201
TCONS_00008045 mRNA downstream 266003 30106182 ~ 30158223 (-) False XLOC_004201
TCONS_00008057 mRNA upstream 27152 30535943 ~ 30611814 (-) False XLOC_004206
TCONS_00008058 mRNA upstream 27754 30536545 ~ 30601401 (-) False XLOC_004206
TCONS_00008059 mRNA upstream 27754 30536545 ~ 30601494 (-) False XLOC_004206
TCONS_00008060 mRNA upstream 27754 30536545 ~ 30612166 (-) True XLOC_004206
TCONS_00008061 mRNA upstream 117977 30626768 ~ 30634286 (-) False XLOC_004207
TCONS_00008052 other downstream 59402 30358109 ~ 30364824 (-) False XLOC_004204
TCONS_00008048 other downstream 268391 30153818 ~ 30155835 (-) True XLOC_004201
TCONS_00008043 other downstream 322969 30101142 ~ 30101257 (-) True XLOC_004200
TCONS_00008039 other downstream 477586 29944930 ~ 29946640 (-) True XLOC_004197
TCONS_00008033 other downstream 514601 29896372 ~ 29909625 (-) False XLOC_004196
TCONS_00008067 other upstream 661558 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008075 other upstream 2222374 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008078 other upstream 2862460 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008088 other upstream 3457367 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008102 other upstream 3846753 34355544 ~ 34355662 (-) True XLOC_004245

Expression Profile

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