RNA id: XM_034314835.1


Basic Information

Item Value
RNA id XM_034314835.1
length 2169
RNA type mRNA
GC content 0.52
exon number 13
gene id rpap2
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19027881 ~ 19042630 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCTTGCTGTAGAAATGTGACGAAAGCGGAAGTAAGTGACGGATTTTGTTTTGATGGAAGAAAGCATGGAAGCCGGCGAGAAGAAACGAGCTCGCTCATCTAAAACTAAAAAAGGTGGAAGAGCAGCTCAGGTGAGGTCAGCTGAAGAGGAGGCCAGAAGGAAGGAGGTGTTGAAGGAGGCCCTGAGGGAGAAGCTGGAATTGGAGCGGAGAGCTCTTCAGGTGGTGGAAAGGCTCCTGGACGACGGCGTGACGGAGGATTTCCTGACAGACTGCGCTCGACTGATCACACCAGCTAACTACAGCGATGCAGTGGAGGAACGCTCCATCGTCAGAATGTGTGGATATCCTGTCTGCTCCAACAAACTCGCTAACGTTCCAACTCAACAGTATAAAATTTCCACCAAGACCAATAAGGTGTATGATATCACTGAGCGCAAGTGCTTCTGTAGTAACTTCTGCTACAAAGCCTCGAAATATCTCGAAGTCCAGATATCCAAATCACCGCTGTGGCTGAGAAAGGAGGAGAGACCTCCTGAGGTGAAGCTGTTGAAGAAGGGAGATGGAGGCACTTCAGGTCTGGAGGTGAAGCTATCAGACAGACCTGTGAGTAAATCGGACGTTGAGAATCCGATCCCAGAATGCACCGGGTCGCACGGAGGCTCCAGCGAGGGCGAGTGTAGCGATGAGGAGGAGGGCTTCGTGTCCAGCGTGGTGGCCAGACAGCAGCAGCCGAGGCGTGTTCGCTGGGGGGATCTGCCCAGGCGGGACGGAGAAAACCAAACGCACGACGGTGACGCCGAAGTGGCAGGTGTGAGgcgtgagagagagaagcgCTGTGATGACGCTAAGGTCTCTCAACCAGTCAGTTCCTCAGTGTCAGTGGATGAAACCAGTGAGCTTCTACAGCAGGTTGCTCTCTCCGACTCTCCTGCTTCGGCTGACAACTCTCTCGAAACGAGCCTCGACATCTCCCAAGTGGGGATGAGTAAAAAAACTGCTGCTGGACTCCGAAAGCTGCTAAAGAGTCACGGGAAAGCGAGAGCCGAAGCTCCGGCGGTCACGCTCAGCCTGCTGgaaggtctcacacacacattgatggAGTGGAGAACCGAGGAGACCATGAGGTTCCTCTACGGACCAGATTACACCTCACACACTGAGGCTGAGCTGCAgagcgaggaggaggaggaggaagagctgGATGAAGATGACCTGGAGGATGTAGAGAAGGTGAAGCGTTCAGGAGAAGGTTCAGGAGGAGGTTCAGGAGGAGGTTCAGGAGAAAGTTCAGGAGGAGGTTCAGGAGGAGGTTCAGGAGGAGGTTCAGGAGGAGGTTCAGGAGGAGGAGCTCAGGCTCGACCCTCTGCAGCAGCACCTGATTATGACACTCTGACGAGAGAGACGCAGATGCTGGCGCTCCAAGTGCACGAGTTTtacagaggagtgtgtgtccTGCCTGAGGAGGTGCAAACAGAAGCTGGagaggagaaaacacacaccgAGGACCGAGAGAACGCCCCGCCGTTGCCGCTGGTCGACTCTCGTTCTCAGCGAGCGATCCAGAGACGCATTGCTGTGGAGAAGCTCTGCAGAAGTCTAAGAGACGTCGTCGGGCCTCTGGGTCTAACCATGAGCGAGATCATCGATGATATTAACGGCATAGTCCGGACCTTCAGATTTACTAACGTTAACATCATCCACAAGCCTCCTGAATGGACCTTGATTGCCATCGTTTTGCTTTCAGCGTTAACTGAAGTGTCTCCGTCGCTGAGGGAGTCGATGACGAGGACGTGTTCAGTCGAGTACATCAGCTCTCTCATGAAGGAGCTCAGACTGAAGGACGAGGATCTGCAGAACCTCGTGAAGCTCTTCAAGCCTGTCAGAAGAGCGCACGCTACACACTCGGCTACAGAGTAGAGCCGAGTAACAAGGcagtaaaactgaaaataatacaaataaatgcagTTGTGTGAACCAGAAAACAAGGCTacttgaaatgttttcttttttttaatctttctgatTGAGATTCCTGAGCAGCTCTTAATTATAATACTGTAATCCTAAATCATGTGTAAACCTGGGTATAGGTTTGACATTTTGCTCAATTTTGATGTTTGTCGTCCTGAAGAATGCGgtgcaaattattaaaatgtttggcTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU382280 lncRNA upstream 33260 18993758 ~ 18994623 (+) True G322817
TU382249 lncRNA upstream 42801 18964741 ~ 18985082 (+) False ssbp3a
TU382250 lncRNA upstream 43077 18944698 ~ 18984806 (+) False ssbp3a
TU382261 lncRNA upstream 68564 18959083 ~ 18959319 (+) True G322802
TU382194 lncRNA upstream 213066 18814614 ~ 18814817 (+) True G322747
TU382465 lncRNA downstream 64756 19107386 ~ 19109334 (+) True G322957
TU382490 lncRNA downstream 162048 19204678 ~ 19218238 (+) False gng12a
TU382511 lncRNA downstream 271249 19313879 ~ 19316048 (+) False LOC113546339
TU382639 lncRNA downstream 391600 19434230 ~ 19438075 (+) True G323104
TU382711 lncRNA downstream 470094 19512724 ~ 19523033 (+) False G323168
XM_026946319.2 mRNA upstream 13690 19006527 ~ 19014193 (+) True cdc7
XM_034297785.1 mRNA upstream 13690 19006527 ~ 19014193 (+) False cdc7
XM_026946356.2 mRNA upstream 25676 18995557 ~ 19002207 (+) True cdcp2
XM_026946195.2 mRNA upstream 43904 18951688 ~ 18983979 (+) True ssbp3a
XM_026946360.2 mRNA downstream 31077 19073707 ~ 19077866 (+) True rpl5a
XM_034314913.1 mRNA downstream 52292 19094922 ~ 19106149 (+) True mtf2
XM_026946323.2 mRNA downstream 67658 19110288 ~ 19136781 (+) True ccdc18
XM_026946173.2 mRNA downstream 100978 19143608 ~ 19159205 (+) False scinlb
XM_026946174.2 mRNA downstream 104004 19146634 ~ 19160143 (+) True scinlb
XR_004580282.1 other upstream 156523 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 605252 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 800650 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 800747 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 1396275 17570649 ~ 17631608 (+) False egfra
TU383181 other downstream 1396072 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 1594954 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 1872774 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 1978559 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 2092489 21135119 ~ 21136847 (+) False G323615

Expression Profile