RNA id: XM_034314845.1


Basic Information

Item Value
RNA id XM_034314845.1
length 1745
RNA type mRNA
GC content 0.51
exon number 14
gene id kpna5
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21279 ~ 31855 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gatgttaGGAGCCGTCAGTATCTTTTGGCCGCCATATTGCCCTCATCAGTGGGAGTGATAGAGGAAGGGTGAGAGAAGGAGATTAAAAACACGCAGAGCTCGTTTCCGAGAGTAAATGGGTGAGAATCGGCGCGATGGCGAGTCCAGGAAGAGAGAATTATCGGATGAAGAGCTACAAGAACAAAGCGCTGAACCCGCAGGAGATGCGACGGCGCAGGGAGGAGGAGGGCATTCAGCTCCGCaaacagaagagagaagagCAGCTGTTTAAGAGGAGGAACGTGTGTGCGCCGTCGTGTGACGAGTCCATGCTCgagtgtcccatccaggatcCCGACATCAGCTCCACCGTGCCCATGTCCTCAGACGCAGTTATAACTCCAGACATGGTGCAGATGATCTTTTCTGAAGATGTGGACCAGCAGCTCCTCGCCACGCAGAAATTCAGGAAATTACTCTCCAAAGAGCCGAACCCGCCCATTGATGAGGTCATCGCCACGGCCGGTGTAGTGAGCAGGTTTGTAGAGTTTCTGAAGAGGAGTGATAACTGCACCCTGCAGTTTGAAGCAGCCTGGGCTCTGACCAACATCGCCTCCGGAACATTCCTGCACACTAAAGTGGTGATCGAAACAGGAGCTGTTCCTATTTTCATCGAGCTGCTCAACTCTGAGTATGAAGATGTGCAGGAGCAGgccGTGTGGGCGCTCGGGAACATTGCAGGAGATAATGCAGAGTGTAGAGACTTTGTCCTCAACTGCGGAATACTCCCTTCACTACAGCAgtTACTTGCGAAATCGAACCGTCTCACCACCACTCGGAACGCTGTGTGGGCTTTATCCAACCTGTGCAGAGGTAAAAACCCTCCACCAGACTTCAGCAAGgTGTCTCCCTGTCTCAGCGTCCTCTCCAGATTGCTGTTTAGCAGTGATCCAGATGTTTTAGCAGATGCGTGCTGGGCCCTTTCCTATCTGTCTGATGGTCCAAACGAGAAAATCCAGGCCGTGATTGACTCGGGAGTGTGTCGCAGATTAGTGGAGCTGCTcatGCACGGCGATTATAAAGTGGTGTCTCCTGCGCTGCGGGCCGTGGGAAACATCGTGACTGGAGACGATATTCAGACTCAGgtaaTCCTGAACTGTTCAGCGTTACCCTGTCTCCTTCACCTGCTCAGCAGTCCTAAAGAGTCAATAAAGAAAGAAGCATGTTGGACTGTTTCAAACATCACAGCAGGGAACCGAGCGCAGATTCAGACGGTGATCGATGCCAACATTTTCCCTGTGCTGATTGAGATCTTACAGAAAGCAGAGTTTCGCACCAGGAAGGAAGCAGCGTGGGCCATAACCAACGCCACCAGCGGGGGAACACCAGAACAAATCAGgTACCTGGTGTCTCTAAACTGCATTAAGCCAATGTGTGACCTGCTGACAGTGATGGACTCAAAAATTGTTCAAGTTTCTCTGAATGGTCTGGAAAATATCCTCCGGCTGGGGGAGCAGGAATCCAAACAGAACGGCACAGGAATTAATCCATACTGCGCACTCATTGAAGAGGCCtacgGTTTGGATAAGATCGAGTTCCTGCAGAGCCACGAGAATCAGGAGATCTATCAGAAAGCGTTTGATTTAATTGAGCATTACTTTGGCGTGGAGGAGGAGGACGCCAACATCGCCCCTCAAGTGGACCAGAACCAGGATCAGTACATTTTCCAACAGCACCACGGACCCATGGATCGCTTCCAGCTCTAA

Function

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369782 lncRNA downstream 80515 111771 ~ 112458 (+) True G312177
TU369784 lncRNA downstream 81561 112817 ~ 113108 (+) True G312179
TU369786 lncRNA downstream 84876 116132 ~ 121332 (+) True LOC113525271
XR_004580289.1 lncRNA downstream 87702 118958 ~ 121478 (+) False LOC113525271
XR_004576912.1 lncRNA downstream 129249 160505 ~ 164094 (+) True LOC113525279
XM_026911744.2 mRNA upstream 12961 4175 ~ 8335 (+) True rwdd1
XM_034314800.1 mRNA downstream 159061 190317 ~ 193534 (+) False pnrc2
XM_034297765.1 mRNA downstream 186671 217927 ~ 543043 (+) True LOC117595741
XM_034297764.1 mRNA downstream 186682 217938 ~ 543043 (+) False LOC117595741
XM_034297758.1 mRNA downstream 208022 239278 ~ 272041 (+) True dop1a
XM_034297756.1 mRNA downstream 208022 239278 ~ 272041 (+) False dop1a
TU369774 other downstream 61228 92484 ~ 92915 (+) True G312171
TU369775 other downstream 62643 93899 ~ 94925 (+) True G312172
TU369797 other downstream 142982 174238 ~ 175541 (+) True G312191
TU369780 other downstream 158283 189539 ~ 193234 (+) True pnrc2
TU369781 other downstream 158283 189539 ~ 193234 (+) False pnrc2

Expression Profile