RNA id: XM_034314848.1


Basic Information

Item Value
RNA id XM_034314848.1
length 1900
RNA type mRNA
GC content 0.51
exon number 15
gene id gk5
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20450448 ~ 20461880 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTCTCTGCTGTATCCGGAGCGTGGCTGGGTGGAGATGGACCCGGAGGATCTGTGGCAGAGCTTCATCAGTGTGGTGAAGGGAGCAGTGCACGactcAGGTTTACAGATGAGTCAGATGGAGGCGTTGGGTATCTCAACTCAGAGAGCCACCTTCACCACCTGGCACAGGAAGACGGGGAAACCGTTTCATAACCTGATCGGCTGGCAGGACCTGCGAGCGGCCGAGATGGTCAAGTCCTGGAACAACTCGTGCACCATGAAGgcgGTGCACGGTGTGATGAAGATGCTGCACTTCCTCAGCAGACGGAAGCGTTTCCTGGCGGCGAGTTTGGTGGTCTTCACGCCGCAGCACGTCTCCATGCGTCTGGCCTGGGCTTTACAGCACATCCCTCAgctgaaGCAGGCGGTTGATGAAGGAACTTGTTGTTTTGGGACCATCGACACGTGGCTGCTTTATAAACTCACTAAAGGTTTGGTTCACGCTACAGATTATTCCAACGCCAGCTCAACTGCCATCTTCGATTCCTATCAGatgtgttgGAGCGGGTTTCTGtgttctctcctctctctacctctctccaTCCTCCCCACGGTGCACAACACGAGtCACCATTTTGGCTCCTCTGATCCCGACATCTTCGGGGTTTCTATTCCAATCATGTCAGTTATGGCGGATCAGCAGGCGGCCATGTTTGGCGAGTGCTGCTTTGATGCTGGTGATGTAAAGATTACCATGGGAACAGGAACCTTTATGGACATCAACACAGGGAACAAACCACACACGTCTGTAGCAGgtctgtaTCCCCTGGTGGGCTGGAAGATCGGCTCTGACGTCGTGTATCTCGCTGAAGGAAACGCTGCAGATACAGGAACCGCCATCAGATGGGCTCAGGAGATCGagCTGTTTACAGATGTAAAGGAAACCTCAGCCATGGCCAGCAGTGTGAGCGACTCGGACGGAGTGTTCTTCGTTCCTTCGTTCAGCGGCTTGCAGGCGCCGTTAAATGACCCTAAAGCGTGTGCAGCGTTCATGGGTCTGAAACCATCCACCACTAAGAGTCACCTCGTCCGCGCCATTTTAGAGTCCATCGCTTTCAGGAATAAGCAGCTGTTTGATCTGATGCGTCGGGAAACTCGAATCCCCATCACTAAAATCAGGGCAGACGGCGGTGTGTGTATGAACGACTTCATCATGCAGTTAAGCGCAGACCTGCTGGGGCGTAAAATCTCACGGCCCACGCATTTCGACATGTCGTGTCTCGGGGCGGCGTTCGTGGCCGGGTTAGGAGTCGGTTACTGGAAGAGTAAAGAGGAGCTGAAGAAACTGCAGATGACGGAGCGTCTCTTCCTTCCTCAGAGCGTTAAAGGAGACGCAGGAggaggtgatggaggaggaggtgatggaggaggaggtggaggaggaggaggaggaggaggtggtgtgTATAAACCAGTCCTGCAGAGCTGGGAGCAGGCCCTGCAGCGCTCCATGCACTGGTACAGCCACAcgtcataaaacacacacacacacacacacacacacacacacacacacacacactcggctcCAGAAGATCAGAGTCCAGCGGTGTTGTTCACTCTTCCAAGATCTCGTTTCATCTGTTCACAACCTGccacgatgatgatgatgatgaagatgatgatgatgatgatgatgaagagccACGTTTTACACTGATGTGCCTTAAACGTAACGCACCTCTGACTTCCCCTTTATTTCCACGTTAgactttaattcattttgtcTATTTACGGAGCGTCGTTCCGCCATGTTTTACTCTGATACGCTTTAATTTCATTCCcaataaaggttaaaaaaaaaaaaatagcggAAACAAATTCAgcgattaaaaaaatagatttaaggaaaaacaaaa

Function

GO:

id name namespace
GO:0019563 glycerol catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004370 glycerol kinase activity molecular_function

KEGG:

id description
K19583 GK5; putative glycerol kinase 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383516 lncRNA downstream 4236 20444984 ~ 20446212 (-) True G323775
TU383523 lncRNA downstream 8076 20417610 ~ 20442372 (-) False G323781
TU383522 lncRNA downstream 8988 20417610 ~ 20441460 (-) True G323781
TU383513 lncRNA downstream 14408 20389241 ~ 20436040 (-) True G323773
TU383524 lncRNA downstream 22057 20428106 ~ 20428391 (-) True G323782
TU383530 lncRNA upstream 8250 20470130 ~ 20471017 (-) True G323787
XR_004580297.1 lncRNA upstream 20194 20482074 ~ 20493538 (-) False LOC117599955
TU383538 lncRNA upstream 20429 20482309 ~ 20527256 (-) False LOC117599955
TU383544 lncRNA upstream 33822 20495702 ~ 20501519 (-) True G323797
TU383545 lncRNA upstream 33822 20495702 ~ 20501519 (-) False G323797
XM_034314710.1 mRNA downstream 6019 20436489 ~ 20444429 (-) True ppp1r7
XM_034314709.1 mRNA downstream 16906 20422172 ~ 20433542 (-) True ubxn7
XM_034314778.1 mRNA downstream 45246 20388826 ~ 20405202 (-) True LOC113546371
XM_034314775.1 mRNA downstream 75777 20370971 ~ 20374671 (-) True LOC117599977
XM_026946206.2 mRNA downstream 99794 20338178 ~ 20350654 (-) False LOC113546384
XM_034297728.1 mRNA upstream 135 20462015 ~ 20469569 (-) True LOC113546455
XM_034314890.1 mRNA upstream 239018 20700898 ~ 20714017 (-) True sh3glb1b
XM_034314622.1 mRNA upstream 270721 20732601 ~ 20757942 (-) True LOC113524963
XM_026911354.2 mRNA upstream 312152 20774032 ~ 20780151 (-) True amy2a
XM_034314686.1 mRNA upstream 431863 20893743 ~ 20943796 (-) True abca4b
TU383462 other downstream 38642 20384201 ~ 20411806 (-) False LOC113546371
XR_004576925.1 other downstream 135236 20315137 ~ 20315212 (-) True LOC117595748
XR_003404720.2 other downstream 140875 20309497 ~ 20309573 (-) True LOC113546475
TU383446 other downstream 254776 20195294 ~ 20195672 (-) True G323726
XR_004580317.1 other downstream 943251 19498561 ~ 19507197 (-) False kdm4ab
TU383528 other upstream 5730 20467610 ~ 20469469 (-) False LOC113546455
TU383651 other upstream 248817 20710697 ~ 20713991 (-) False sh3glb1b
TU383689 other upstream 366146 20828026 ~ 20830104 (-) True G323902
TU383704 other upstream 499546 20961426 ~ 20969169 (-) False LOC113524960
TU383705 other upstream 499693 20961573 ~ 20976337 (-) False LOC113524960

Expression Profile