RNA id: XM_034314852.1


Basic Information

Item Value
RNA id XM_034314852.1
length 1412
RNA type mRNA
GC content 0.37
exon number 4
gene id LOC113543357
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3642315 ~ 3646672 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGGAGGTTCAGAGATCAGAGACACCCAGCACTCCGATGTGACCGACTCGCAGGGGACGGAGCAGTTGATCATTTCTAATCGATCCAAGTGTGGAGAGATGCATCACCAAAACCAGCACTGTTCTCTCTCAGACAGACAGCGTATCTGCTGTCATAGTTTGACGAGACATCATGGAGGATTTGAATACGATTCAACTAGGCAGCAACAGAAGGAGGACACCAATGTCCCGGGGACGCAAGAATGTCCAACTGTGTGTTATTATGCAGGAGACAGTGAGCTCACCCATGCGTACATTCAGAACGAGACTGATTCCTGCTTGAGTGATTCTGGAAGTGATTTTGGAGAAATGTGCCACCAGCAGGATATCCACGATGTCCTGATGGATCCATGCCTCCAAACCTGTGCTGGTAGAGAACACAACCCTGAAGTGTCTCATCCTCAAACCAGTGGAAGAATGAATGAAGAGCCAGAACAGAGTCAAGACACCGTATGTCCATGCAGTGCTGTACATTCAAGATGGAGTAGCAACCAATGGCCATCTTTACCTCCTCCGTGTTGTAATGTAAGAAACGCATTGGTGGTGGGTGTCGAAGTGGATGTTCTAGAAGAGGTGGTCTACGAAGACACGGAAATTGTTCAAACACAGACCATGTTTGATGGCTGCCTGGAGGATCATATGATGGACTCCACCTCATGTTATTGTGACCAGTTGTTTTTCATGTGACTGtaacaaatgatattattattccttacattattatacattatcatatacattatattattaatattaataatagcaGGCTTATTTttgtcatctgtgtgtgtttacaatgtCTTTAGGAAAAAGTGCTATATTCAGAATAACAGTCATTTTGTCATTCAGAGTGCTAActattaagaaataataatattattatttccgGTTGCTTCGTATTTAGCAGCATTATGATAAGAGTGGCTGatattacttttaaataacTGAAGCATTGATTAATGTAAGTTAGCTTTTGGCATGTCATAaagactttaataaataaaagagtggGAAATTTATTTGGTCTGAGATGCATTTGGTAAGATATTGAATAACCAGACAACAGggaggataataataataataataataataataataataataatactgagacTATAATAGTCTacaatgataatgataatatttaactttttagGCTATTTTGATAAGAATTGCATGTGTTGtgtattaaatatactgtaccTCAGCTTCAAGGTTATTTTGTTAATTCAATTCCAAGAATTGCCAGAAAGCCACTTTTATTTCCTCTTAATCCTTCATTGCTCTGTACTTTGATTGGATTCTGcctcattttgtcattttgagtaaaagtgtctgctaaatgaataaatataaatgtatatgagATTA

Function

GO: NA

KEGG:

id description
ko04020 Calcium signaling pathway
ko04724 Glutamatergic synapse
ko04720 Long-term potentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU371775 lncRNA upstream 117797 3524309 ~ 3524518 (+) True G313853
TU371743 lncRNA upstream 153016 3481100 ~ 3489299 (+) False LOC113543208
TU371707 lncRNA upstream 343009 3299098 ~ 3299306 (+) True G313796
TU371493 lncRNA upstream 565945 3076049 ~ 3076370 (+) True G313607
XR_003404407.2 lncRNA upstream 697108 2942487 ~ 2945207 (+) True LOC113543325
TU371896 lncRNA downstream 126398 3773070 ~ 3819909 (+) True G313949
TU371923 lncRNA downstream 160476 3807148 ~ 3808690 (+) True G313975
TU371944 lncRNA downstream 199185 3845857 ~ 3846095 (+) True G313990
XR_004580328.1 lncRNA downstream 241355 3888027 ~ 3895685 (+) True LOC117599982
TU372207 lncRNA downstream 349830 3996502 ~ 4000314 (+) True G314222
XM_026941367.2 mRNA upstream 119102 3502067 ~ 3523213 (+) True atg5
XM_026941285.2 mRNA upstream 152948 3423567 ~ 3489367 (+) False LOC113543208
XM_026941286.2 mRNA upstream 152948 3426805 ~ 3489367 (+) True LOC113543208
XM_026941397.2 mRNA upstream 324364 3298344 ~ 3317951 (+) True sall3a
XM_026941475.2 mRNA upstream 559564 3080016 ~ 3082751 (+) True nrn1b
XM_026941244.2 mRNA downstream 1075 3647747 ~ 3662687 (+) True nt5c3a
XM_026941245.2 mRNA downstream 9362 3656034 ~ 3662687 (+) False nt5c3a
XM_026941277.2 mRNA downstream 166581 3813253 ~ 3816854 (+) True pmvk
XM_026940992.2 mRNA downstream 316083 3962755 ~ 3968351 (+) False tagln
XM_026940991.2 mRNA downstream 316083 3962755 ~ 3968351 (+) False tagln
trnas-aga_16 other upstream 14202 3628032 ~ 3628113 (+) True trnas-aga_16
trnas-aga_14 other upstream 16285 3625960 ~ 3626030 (+) True trnas-aga_14
trnas-aga_13 other upstream 16818 3625416 ~ 3625497 (+) True trnas-aga_13
trnat-agu_12 other upstream 752927 2889315 ~ 2889388 (+) True trnat-agu_12
TU371295 other upstream 966467 2675281 ~ 2675848 (+) True G313445
trnap-ugg_21 other downstream 300263 3946935 ~ 3947006 (+) True trnap-ugg_21
XR_004580320.1 other downstream 945768 4592440 ~ 4692816 (+) False LOC113543063
TU372694 other downstream 1290376 4937048 ~ 4958120 (+) False LOC113543089
TU372695 other downstream 1290376 4937048 ~ 4958120 (+) False LOC113543089
TU372696 other downstream 1290376 4937048 ~ 4958120 (+) False LOC113543089

Expression Profile