RNA id: XM_034314876.1


Basic Information

Item Value
RNA id XM_034314876.1
length 3397
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC113543359
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4174793 ~ 4183429 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAACATGGTTTCCtttgtgtatgtgcatatgCATGCAGCAGAGAGACAAAGCTAAATTGTGAACTGAAAGAAATCAGTAGTTTCTACACAAATCGACAGGCAAGCACACAAGAATCTAAGGCATCTACTCagGATCTGATGAGCgatggagagaggagaaggCAACAGCTCAGTCTCTCAAGGTCACAACTGTAACCATTCAGAGGAATACAAATTCACCACCTACACCGTGGTCTTCAGCCTGGTCTTTATTTTTGGTCTCTTGGGCAATGCTGGCGCTCTGTACGTCTTCTGCAAGCTCTCGGTGAAGAATCGTCTCTCTACTATCATTCTCATCCACCTTGCTGTATCAGACCTGATCTTCATCCTTACATTGCCACTAAGGATCGCCTTTTACTCCAACAACTCAGCTGGTATGCAGGAATCTTCTCCCAGGTCCACAATGTCACATTTGAACCTTGCCTGCCGTTTCTCCACCTTCTTGTTCTACATCAGCATGTATTGCAGCATTTTCTTTCTGACAGCCCTTAGCGTGTGCCGCTACCTGGTGCTAGCAGGTCGAGTTCGGCTCCAGAACAGTGAGGCTTGCAGATGGGCTCGCTTCCTGTGCTGGGGAATCTGGGTTTTTGTGATAGGGGGGAACATTTTATACCTTGGTATAATCACTGGGTTCAGCATGCAGGCAGAGGGATGCCTGGAACCAGCAGGGAAAGAGTCCTGGGCTTTGGTGTATCGTCTGAACCTGGTGGTGCTGGTGATCTGCTTTTTGCTTCCGCTAACAGTGGTGTTGATTTGCTACTGCCTCATGATCAGACACATCTTGAGGATCCGTGCTGGCCAAAGGCAGCGTGATGTGGCTCTGATCTGCTTGGTGCTTTTgatcttctgtttttgtttcctcCCTTACCACATCCAACGCACGCTGCACCTCCACCATATGATGTACCAGCACCCAGAGGCATGCCAGTTGCTGGCCACCTTGCAGAAATCGGTGGTGGTGACGCTGTGCTTTGCTGCAGTCAACAGTTGCCTGGATCCACTTCTCTTCCTGTTTGTGGGCCATGGTTTCAAAACAGTGATCAATAAGTTCATTGCTCGTGCACACCTTTCTTGGGCACTAGAGAATACCAATTTGAGTTCCATGGCTCCAGCTGTTGTGCAGCTACCATTGGTTGGAGAACCAAATACAACAAACAGGGACCAAGGTTTCTCTATGGAGCTGCTACTCTCCCagaaaaatgatattactgtTTGATGGCTCCATCAACATTGATGGCTCTTCAACCAAGGAAGTGGGAGGGCGTTTAAATCTGCCATGCTTAGTCCAGTGACACAAGGCAACAAAAAATGTCTGCTAGACTTTTTGGGGTATTTTTTCTTCCTTGGCGCTTGAATTAAACAGACATTGCTCCAGCCTAGTCTCATTTTCTGCCTTATTACAGCTGATGTGTGTCTTCTAGACTCACTAAGAGAACAGTCAAGATTATAAAACAAGTGGATAGTTGTGCCGTGTGTTCCTCCAGACAGGCGGTAATAATTAGAGAAAAAAGGGAGCAAATGAACTACACCATACATCTGCAGTTCATCAACCTTATGATCTGACAAACTCTTTAAGCAGACTGGCTTTTAAGAGCCACAGTGGTTAGaacattttgatttgacatCTAAGCAGGTTTTCTAAGAAATCTCATTCTTTGATCAATGTGTATGACAGTTAAGGAACCTGAGCAGATCAGTAGTTAGACTGTGTTGGTTTCACTTTGTAAGCACATTGTCCTGGACAGCTATGAGCATGTGAATATATTCACAAAGTAGATAAGCCTGGTTTAGCTATATCAAAAGATTAACAAAGTGCACATGGCAAGGCATGTACCACATTCCATGACTGATATCTTAAAGATGTGTGTCTTCTTCCTGCCAAGTGCAAAAGCATCCTCTTTTTCATAAAGTCTGTTTCAAACTGCATTCTGATTTGATCACAGTTCATTTAAAGTGCCTTAAAGTTAATGCTTACAGTAATAAGCCCTTAACATGGAAGCCAAAATGATACGTTATCCCAGAATACTTTTGATTAACTAAGTTTATTGGAATGGGTATCATTTAAATTCATCCCTGCCACAAGATAAAGTGCCTTTACATAtaagatgtttaaaaatggtATAGAAGCCTGTTCTAATATCTATCACACCATACTTATTATCCTGCTGTGGATTTAGTGGGAATCAGCTGCCAAAATATTTAACCATAGATAATTATCCCATgctaaatgtaacattttaggAATAGCACAAGTTTTTTTTCACCCCTGTCCTTGACTCAGGAAAGGTATTTAATTAACTGATTCAAGTCCATCACAGGTTAGGAGAGATGGATTGGTAAATCCTGGGCCTCTGGGCAGGAACCTATTCAGGAACCCTCTCGCCACCCCATTAGGCATGAACCAGTGGAAGGAACCCTTCGTACCCCACAACCCAGCACATGCAATATTAAATGCACTGTACTTCAGTAAACATCTATTATGAATATTTGAGTAGTTTCGGTGATACTTTGGAACACAGTCTCACTGCAGTCGCATCCAATTTATTTCAGGCTCTGCGACTTTACATCCATTGGCTTATATTCCATGAATCGTGTTTTGTGTGACAGCTTAATGGCCTAGTCCTTCTTAAATCGACGCTACAAGGACCATTAGTGGCCATGGTTCCTGAGCATGTGCCCAGTAGGTTGCTGATTGCAATCAATCCCTATAGGGGTGGCACAGGGGTGCAATGGGTAGCCTTGGGTCATTCGTGAGCTTGGGgaactgtgtggagttttgcatgttctccccatgtacATATAGGTGTTCACCAGGCTCTTCAATtacctccaaaaaacatgccagtaggtggattggtgactctaacttgccctagttgtgaatgaatgtgcaaatgtgtgtgcgtggtgccctGTGACAGaatggcgtcccatccagggtgtgttcctcgGATAAGCTTTGGATCTGCCATGACGCTCCAGGATAAAGAGCTTGAATGAATCTAGTGGAATGATCTGTTTGTATTGTTaaatcttttgtgttttatacTCTAAATCCTTCATAAGGACACAGGCAAAATCTTTTCAATACcaacacattcacattttcatacatttcaCATTCTTTAGGAGAGATTTGTTCCAAACAGATCATTTATCTCACATTTTGTGGCAGGCTGTCTCTGGTGATTTCCATCTTATTTGCAGAATTCCCTTTGATAATCAGTATGCTGTGTTTTTTGGCAGAAAGAGCTTCATGTTAATGCTAGTCCCTGAAGACTCGGtccaaaaatggaaatgaaaagcTAGCATGATTTTAGAATTATACTTAAACCATACTTGGAGATTTTGTTACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU372207 lncRNA upstream 174479 3996502 ~ 4000314 (+) True G314222
XR_004580328.1 lncRNA upstream 279108 3888027 ~ 3895685 (+) True LOC117599982
TU371944 lncRNA upstream 328698 3845857 ~ 3846095 (+) True G313990
TU371896 lncRNA upstream 354884 3773070 ~ 3819909 (+) True G313949
TU371923 lncRNA upstream 366103 3807148 ~ 3808690 (+) True G313975
TU372364 lncRNA downstream 106825 4290254 ~ 4293729 (+) True G314362
TU372366 lncRNA downstream 111436 4294865 ~ 4295074 (+) True G314364
TU372412 lncRNA downstream 196208 4379637 ~ 4384865 (+) True G314402
TU372416 lncRNA downstream 334172 4517601 ~ 4527820 (+) True G314404
TU372431 lncRNA downstream 505540 4688969 ~ 4762095 (+) False LOC113543063
XM_026940992.2 mRNA upstream 206442 3962755 ~ 3968351 (+) False tagln
XM_026940991.2 mRNA upstream 206442 3962755 ~ 3968351 (+) False tagln
XM_026940989.2 mRNA upstream 206442 3962756 ~ 3968351 (+) True tagln
XM_026940990.2 mRNA upstream 206442 3962757 ~ 3968351 (+) False tagln
XM_026941277.2 mRNA upstream 357939 3813253 ~ 3816854 (+) True pmvk
XM_026941365.2 mRNA downstream 42069 4225498 ~ 4238706 (+) True igsf10
XM_026941339.2 mRNA downstream 68441 4251870 ~ 4256834 (+) False p2ry12
XM_026941338.2 mRNA downstream 69319 4252748 ~ 4256834 (+) True p2ry12
XM_026940995.2 mRNA downstream 74936 4258365 ~ 4263286 (+) True LOC113543045
XM_026940994.2 mRNA downstream 74967 4258396 ~ 4263286 (+) False LOC113543045
trnap-ugg_21 other upstream 227787 3946935 ~ 3947006 (+) True trnap-ugg_21
trnas-aga_16 other upstream 546680 3628032 ~ 3628113 (+) True trnas-aga_16
trnas-aga_14 other upstream 548763 3625960 ~ 3626030 (+) True trnas-aga_14
trnas-aga_13 other upstream 549296 3625416 ~ 3625497 (+) True trnas-aga_13
trnat-agu_12 other upstream 1285405 2889315 ~ 2889388 (+) True trnat-agu_12
XR_004580320.1 other downstream 409011 4592440 ~ 4692816 (+) False LOC113543063
TU372694 other downstream 753619 4937048 ~ 4958120 (+) False LOC113543089
TU372695 other downstream 753619 4937048 ~ 4958120 (+) False LOC113543089
TU372696 other downstream 753619 4937048 ~ 4958120 (+) False LOC113543089
TU372849 other downstream 904672 5088101 ~ 5091097 (+) False sptssb

Expression Profile