RNA id: XR_004580351.1


Basic Information

Item Value
RNA id XR_004580351.1
length 2182
RNA type misc_RNA
GC content 0.45
exon number 10
gene id LOC117599997
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2655200 ~ 2662399 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGACCCCTAGGATGGACTGCCCCAGCTGCATGAAGAGCACATGCTTTAAATGCAAAAGCCCTTGGGCTTCCCAGCATGAAGGACTTTCCTGTGAGAAGTTTAAGGAATGGTTGCAGCTCAACAGCCCCGAGTTCCAAAACTCGCGTCTGGAGCTCCTCCTCAGCAGGAACAAGATAGattGCCCGAAATGCAAGTTTCGGTTCTTTCTGTCTAAAGGCGGCTGTTTACATTTTAAGTGCACTCAATGCCAGCACGAGTTCTGCGGAGGCTGCAGTCGGCCGTTCAGGATGGGCGCTGCGTGTGATTTCTCCGCCGAATGTGCTGCTAAGGGTTTACACGCCCATCACCCCAGGGACTGTCTGTACCACCTCAGAGACTGGAGTGTGGCCAGACTACACAGTCTACTGCAGcaCCATGGCGTGTCCCATCCGTTCGTGTCCAGACGGAGGGATGACAATGGCCAGAAGGGTCAGAAAGGTGTGTGTGGAGTAATGGAGCACAAAGAGACAGGCAGTGTAAAAGAAGAACCATGTGGACGCCCGGCTTTCCAAGAATATAACGGCTACTGCACccttCATTATAAGGAGTGTCTAGTGGAGCTGGTTAACCAGAACCGCCTTGATCCGGTGGTGCTGCTCGAGGGACCCGAACTGCGTGCCGAACTGGACCGCTGGAAGATCCCAGCCCCGGAGAAGCAACCCCTGGAGTCAGACAAGATGTACCACGAGCGCCTCAGACAGATGTTGATCGAGAGGGTGGGTTTGTCCACGAGCGTCACTTCGAGGTCAAACCCGGCTGCTCCACCCACACCGTCGCCTTCACCCACCTCCCCAATGCTCGCCGCCGCTCCCTGGTACTCGGTGCTGAACCCGGGCAGAGCCAAAGCTGAAGACTCgcaactgctgctgctgctcaacGATTGAGGAGAGACTTCAAATCAAACTCGCACACTGAGGAAGATCCTGTAGATCTCCATCTTATCCAGTGTGTATCCACAGTGCCCTGAGGTAGCACACCTGATCCACTCGCAGGTACGCTCCTGAAACAGGACTTTTCTATCAGCTGTTGCTGTTAGTTGGAGCTTCAGCACCTCCAGCCTTTTTGTTTAGAAGACTTCCGTTCCTGTAGAGATGGCTCTCCATGCAGCTCTGCACAATGAAGTCTgaagtaagAATACAAGATGAACCGATCACTTTCAGACACCACAGgagtcACCAGTCtcagtttacactttctggtttcttgtttacatgacaagctgcattttttgccttattaacttcaagagggagaaaaaagaggctggtgaaggaacgactgttttaGATGCTATAACAGACATTCCAcgacattaagtgtaactataaacagataaaaattgtaatccttgctgtggtgtaagaggaataaaacactttgtaatgtgctgttataggaaaataatcaactttagaaaaggaaaaatattaacCCTGCTTCACCACACCACCGCATCGCTGATTatctttcctataacagcacaacagagttttatgaaaatatttcatatgcATTAAAGTGTGTTACAGAGCCAAAACAAATGCTAACAGACTGCACTGAATTTTATCTGAAGTTATGCTCTCACtcgtgtgatttatttttttgatataAGTGTGAGACTTGTCTAAACCATGCTGTGTTCATTCCTAGCACTCCACACCACACTAAAACACTGACCACGTTACCGtgtctcctcctccttctttttctccacagtgcattaatttaaaaatagtttagTGTGAATAACCATCATGTCTCACGGTTCTGATTTAAAGAGCACAGGAATGCAGTTTTTATTGATTGTGAAGTGAGCATTAAACACAGATGTGACATTGTGAATAACTGggataataaaatatttttctatcatGTCCTTGTTTGAATTTTCAATATATAGGACTATCTAATATAAAGCATTTATAACATGGtagaacaaatataaatatcacaaaACCAAAGTACATCAGATTTACGATGTAAACAAATCTAAGCAAAATAAACACCATTATAACATTACAGAGAAATTCAAACGTCAGAGGTGCCGATATTTACGGTTTAGCCATAGCATTTGAGATTTTTGAGTTCTTGCTACGGCGATTCTTGAGACActtggtatttaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370833 lncRNA upstream 531766 2116324 ~ 2123434 (+) True G313052
TU370836 lncRNA upstream 678485 1974099 ~ 1976715 (+) True G313053
TU370796 lncRNA upstream 760253 1894702 ~ 1894947 (+) True G313016
TU370724 lncRNA upstream 1014474 1624563 ~ 1640726 (+) True LOC113543035
TU370723 lncRNA upstream 1018477 1624563 ~ 1636723 (+) False LOC113543035
TU371292 lncRNA downstream 12034 2674433 ~ 2674646 (+) True G313443
XR_004580285.1 lncRNA downstream 68816 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA downstream 72720 2735119 ~ 2735384 (+) True G313465
TU371354 lncRNA downstream 126843 2789242 ~ 2789496 (+) True G313494
XR_003404407.2 lncRNA downstream 280088 2942487 ~ 2945207 (+) True LOC113543325
XM_034297694.1 mRNA upstream 52 2645531 ~ 2655148 (+) True si:dkey-181m9.8
XM_026941358.2 mRNA upstream 329720 2319874 ~ 2325480 (+) True dsela
XM_026941102.2 mRNA upstream 336333 2298126 ~ 2318867 (+) False tmx3a
XM_026940928.2 mRNA downstream 52040 2714439 ~ 2717698 (+) True c21h7orf25
XM_026941137.2 mRNA downstream 56360 2718759 ~ 2728068 (+) True ralab
XM_026941136.2 mRNA downstream 56360 2718759 ~ 2728068 (+) False ralab
XM_026941205.2 mRNA downstream 146028 2808427 ~ 2834932 (+) True plcd1b
XM_026941204.2 mRNA downstream 155343 2817742 ~ 2834932 (+) False plcd1b
trnae-cuc_41 other upstream 160897 2494232 ~ 2494303 (+) True trnae-cuc_41
TU370902 other upstream 469523 2181979 ~ 2185677 (+) True G313112
XR_003404395.2 other upstream 511887 2133214 ~ 2143313 (+) False tgs1
XR_003404390.2 other upstream 677891 1965740 ~ 1977309 (+) True c21h5orf22
TU370328 other upstream 1519180 1131883 ~ 1136020 (+) False paxip1
TU371295 other downstream 12882 2675281 ~ 2675848 (+) True G313445
TU371294 other downstream 12923 2675322 ~ 2675848 (+) False G313445
trnat-agu_12 other downstream 226916 2889315 ~ 2889388 (+) True trnat-agu_12
trnas-aga_13 other downstream 963017 3625416 ~ 3625497 (+) True trnas-aga_13
trnas-aga_14 other downstream 963561 3625960 ~ 3626030 (+) True trnas-aga_14

Expression Profile