RNA id: XM_034314904.1


Basic Information

Item Value
RNA id XM_034314904.1
length 3734
RNA type mRNA
GC content 0.49
exon number 16
gene id ngef
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21147881 ~ 21164789 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TtggcatagagagagagagagtgagagcgaaACAgtaagacagtgagacagaggaAAGGGTGGAGGACGAGACTCACAGAGTCAGACAGGAAGAACAGACTTACTGACTCATGACTCGGGCAGGTGAGCAGACAGACACGGACGAcactgacacagacagagaaagagacaagtGAGGACTGTGGAACGGTGgccatttaacacacacacacaccagatgGAGTTTCTGCTATTCAGATCCCAGAGCCACTGATGCCTTCGGGGTTAGAGGGCAGCGCCATGGCAATTGCAGCCCTGTTCCGGGGCAAGTGGGGTCAGAAGAGTCATGTCCCTAGTCCCAAAGATCCCCCTAAAGCCCCCCTTCCCCATCAccatgatgatgaggatgacgATGATGAAGAGCAGTTGAACACACGAGCACCAATCAGACGCAATTCTCGTTTTTATCGTTCCATGAGGAAGAAAAGACATGCCCAAGGCCAAGCCCAAGAACAAGACAATGAGAGCCCCTCCCACTCACCCAGAGCACCACGTGACTCCAGCAGGACCAGAGCTGCAATCAGAtctccactaacacacacacaacgccCTCCATCGCCTCCACATTATGGAGCGGCGTTGCCAAGCAACGGGAACACCAGAGAAGGCGGAGCTTCCCCACGGTCACCGTTAGAAACAGGAGATTGGCGGCTcagaggagagatggaggaactgagcacacacacaagtcGAGCCTGCAGCATGCAGGACAatgatacatacacacacattcacacacaccgcATGGTCAGcgcacaaaacaacacacacagGATGGTGACAAGCGGAGAGACGGCACGAGGGAACTTCAGCCAAGGTTTAAACATCGTGAAGAGCATTGcGTTCCTGTATCAGGAGTATCGGGACTCTTCAGAACAGCAGGAAATCGAACAGAGGCGGCAGAGAGATGCACTTCCTGAGAAAGGCCTGGAGGCAGGGTCAGGGGTCACCACAGGGTCAGGGGTTACAGTGGGGTCAGGGGTCACGGCCCCTGCACTGCAGCTGCAGTTGCGTAACTCATCTCGCTCTCTGACTTTATGGCAGAATCTCGAGGCCGTGCAGGACAGTGGCCTTTTACACAGACTCCCTCAACGAGAGGTCATACTGCAGGagGCAATGTTTGAGTTGGTGACATCTGAAGCGTCGTATTATAAAAGTCTGGAGCTTTTGGAATCTCATTTCCTTCAGAACCCACTGCTCATTAACacactcagccaatcagacaTGCACTTCCTGTTCTCCAACATCGCTGATGTCATGAAGGCGAGCgagagGTTCCTGATGGATCTGGAGCACCGGATCGAGGAGTCACTGCAGATTTCTGATGTTTGTGACATCGTTCATCATCACGCCGTTAACCATTTCGACGTCTTCATCAGTTACGTCATCAACCAGGTTTATCAGGAGAAGAACTACAGACGcatcctacagGAGAATCCTTCGTTCAGGGAGAACATGGCCATTCTGGAGAATCAGCCAAAAGTCAGAGGCCTGTCGTTCACCTCGTTCCTGATTCTCCCCTTCCAGCGAATCACACGCCTCAAACTCCTGGTGCAGaacaTTCTGAAGAAGGTGGAGGagaactcagagagagagacaaacgcTATAAAGGCTCATCAGGAGCTTgagaggattgtGAAGGAGTGTAATGAAGGTGTGAAGAAGATGAGCCGCACTGAGGAGCTGATCAGCATCGAGAAAACTCTGGAGTTCAAATCGAAGtCTGTGCCAGTGATATCTCACTCCCGGTGGCTCCTCAAGAAGGGCGAGGTTCTGCAGATGTCCGGGCCGAAGAGCACTCGCACTATGCGAAGCCGAAAATTGTTCCATCCCCTCTACCTGTTCCTGTTCAATAACCTGCTGCTCATCACCAAGCGCAGCTCCAGtggggaGAAGTTTCAGGTGTTGGACTCATGCAGTCGCTCCATGTTGAGGACTGAGGATATGGATGATCAGGGTCAGGTACTGGCGTTTGCATTTGTGCTCAAACTGCTGGAGAATCAAGAGGAGCGATCAATTAGCTACATGCTAAAGACCAACAGcatGAGTGAGAAACTGCGTTGGATATGCGCTCTCACCCCAAACCGCAGAACACGATTCCTCTCAGCCAGcgcacacacaccagattcTCCCCAGGTGCAGTGTATTCAGTCGTACACGGCTCAGGAGCCTGATGAGCTGTCAGTGGAGATGGCTGACATTCTGCTTGTACTCGAGGAGACTAACgatgGCTGGATGATGGGTGAGCGTCTGCATGATGGAGAACGTGGTTGGTTCCCATGCCGCGTGGTGGAGGACATTAAGAGCGCTGAGATTCGAGCTCAGAACCTGCGGGAGTGTGAGAGGATCCAGCAGGCGCAGGGGGGAGGAGGGGCCTCCAGGGGGCGCTGGACCCCCAAAAACACATCCTACACACCCACCTggactgaccaatcagagcaggAGTTCTGAGCCACACCCCAGACAAGCCCCACCACTGCATCAGCCTGGATCATGTGACCTGAATCAGATAACCTTGTGGACTcatggggtcagaggtcatacACATCAGCTGTGTGTTCCGATACTGTGTCCTCATCTACTTCCCCTAACGACAAAAACACACGAATGCAGAGCATCACTGCAGCGAGCGTGTtaattagctagcatgctaactcaCACGGAGAGGAAGAACAAATCCCTGAACAGTTTCACTTCTCCCTGGTTCTCCCACCTTTTTGGCTATTACTGCACACTGTAACGTCAGTGACTCGCATTATTTAGGATGAGGGGAAGTTGACGAGGCACATtaacatatttgtgtttttaatggcTGCTTGTGTTAAATCTGTTCTTGTTTACGCCGCATGACGCAGTATCGCTGACGatgaacaaaattttaaaaactcagGACTTATGAATGTGCTCAGTCACACCTCAGTGACGCAGTGGAGTTATtttcaccctgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgtgttattTACAGAAACTATATACTGTACGGAATGTTGcttaagactggaaaaatgaGGAGTGCAGGTTTTGCATGTCATGCAACAGAGTGATTAatccaataaacacacacacacacacacacaaataatctCACACAACCGGTTTGACAGTAAGTGCTTCCTTAAATAGAAGGCTCATGCAGTATGCAGTGatttgtggtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagttacagaAACTATACTGTATGGAATGCTgcttaaaatggaaaaatgaagaGTGCAGGTTTTGCATGTCCTGCAATAGAGAGCTTAatccaataaacacacacacacacacacacacacacacgcacgcacaatCTTACACAACGGGTTTAAGAGTAAGTGCTTCCTTAAACAGAAAGCTCATGCAATATGCAGTGatttgttcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgattatAGATGATGAAGTTCATTCTGGGTCACTGGCTGATTTCTGTGTAAAGTGAATCTGTATTAAGCTCAGTGTAATTTCAGGTGATTGATGTTGTTTTGTAAAAGATAATTTATTGCGAATGCAGAATAAAGTGATGAAAAGCATGCGG

Function

GO: NA

KEGG:

id description
K07525 NGEF, EPHEXIN, ARHGEF27; neuronal guanine nucleotide exchange factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580331.1 lncRNA downstream 1175 21139370 ~ 21146706 (-) True LOC117599984
XR_004580281.1 lncRNA downstream 157573 20981438 ~ 20990308 (-) True LOC117599936
TU383698 lncRNA downstream 201813 20932834 ~ 20946068 (-) True G323907
TU383817 lncRNA upstream 33462 21198090 ~ 21198331 (-) True G323989
TU383831 lncRNA upstream 57548 21222176 ~ 21222600 (-) True G324001
XM_034314689.1 mRNA downstream 843 21138675 ~ 21147038 (-) True LOC113525403
XM_026911898.2 mRNA downstream 10056 21135118 ~ 21137825 (-) True si:ch1073-429i10.3
XM_034314846.1 mRNA downstream 10842 21135118 ~ 21137039 (-) False si:ch1073-429i10.3
XM_034297795.1 mRNA downstream 13480 21121725 ~ 21134401 (-) False eif3k
XM_026911894.2 mRNA upstream 2765 21167393 ~ 21172331 (-) False gpr55a
XM_026911893.2 mRNA upstream 2765 21167393 ~ 21171398 (-) True gpr55a
XM_034314595.1 mRNA upstream 18697 21183325 ~ 21191170 (-) True LOC117599949
XM_026911902.2 mRNA upstream 34568 21199196 ~ 21217695 (-) True LOC113525405
XM_034314870.1 mRNA upstream 53195 21217823 ~ 21219726 (-) True LOC117599990
TU383786 other downstream 10187 21135134 ~ 21137694 (-) False si:ch1073-429i10.3
TU383785 other downstream 50172 21052207 ~ 21097709 (-) True G323963
TU383705 other downstream 171544 20961573 ~ 20976337 (-) False LOC113524960
TU383704 other downstream 178712 20961426 ~ 20969169 (-) False LOC113524960
TU383689 other downstream 317777 20828026 ~ 20830104 (-) True G323902

Expression Profile