RNA id: XM_034314908.1


Basic Information

Item Value
RNA id XM_034314908.1
length 5349
RNA type mRNA
GC content 0.46
exon number 19
gene id LOC113543049
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 9033569 ~ 9163194 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTATTTGATCAGGGCATGGTTCACAGGAGATTACAAAGAGGAGCCCTCCTTCACATCACTCCAAGCCTTACAGCATGGGACCTTCCACAGTTATCACACCCCTCCAAACTTGTGCTACCCACACAGCAACACCTTCAATGGACTCATATCAACAGACAGactaGTGGTGGCACAGAGAAGAGTGAGAAGAGCATGATAGCTTTAGACAGGTACAGAAGCAGTACAGCTCCCTGCCTTGACAACGCGTGCGGCGGTAATATCACAATCACAAGTGCTGGGTACGTGACGTCACCGGGCTATCCGTCGGGGTACCCGCTCTCGCAGCAGTGTGTATGGCTCATCAGCGCCCCTGACCCGCACCAGCGGATCCTCATCAACTTCAACCCACACTTCGACCTCGAGAGCCGCGAGTGCAAgtatgacTTCTTGGAGGTGTATGACGGGGACAGTGAGAAAGCAAGTCTGGTAGGGAAGTACTGTGGTAAGATTGCTCCATCCCCAATCACCTCCAGTGGAAATTTACTGCTGATCAAATTCACCTCTGACTACGAGACCACTGGTGCTGGCTTCAGCATCCGCTATGAGGTGCACAGAGCAGTTACAGAATGTTCCAGAAACTTCACTGCTCTAAGTGGGTTGATACAAACACCAGGCTTCCCTGATAAATACCCCAACAACCTTGAGTGCACCTTTATCATCTTTGCCCCAAAGATGTCAGAGATTGTGTTGGAGTTTGAGAGCTTTGACATGGAACCTGACATCACAGCACCAGCTGGAGCCTCATGCCGATTCGACTACTTAGAGGTCTGGGACGGATACCCAACAGttggCCCTCATATTGGAAGATATTGTGGTTCCAGTAGTCCAGGCCGGGTTGTGTCATACACTGGCATTTTGTCCCTCTCCATCCACACAGACAACGCCATCACAAAGGAGGGCTTCTCATCCAATTACAGGATCCGGTCCAACCAAGAACCCAGCCATGAGCAAGCCAATGAGTGCCTGTCTCCTTTGGGAATGGAATCCGGTGAGATAAGTGATGAGAGAATTGCCGCGTCATCTCAGTACAATCCCAGCTGGTCTCCCTTCCGTTCACGATTAAACTACCACGATAATGGCTGGACACCATCAGAAGATTCTGCCAGGGAATGGATACaggtGGATCTGGGCTTCCTGCGGTATGTTTCAGCTATAGGAACACAAGGAGCCATTTCTAAGGAAACTAAGAAAGCTTACTATGTTAAGACATACAAAGTCAGCATCAGCACCAATGGGGAGGACTGGATCATGGTGAAAGATGGCACCAAGCACAAGGTGTTTCACGGCAGTCACAACCCCACGGACGAGGCCCATGCCTTTTTCCCAAAACCCACACTGACACGTTATATACGGATACGACCTCTAACTTGGGAACATGGCATCTGTATGCGCTTTGAATTATATGGCTGCAAGATATCAGACTCTCCCTGCTCTAGCATGTTGGGGATGGTCTCTGGTCAGATCTTAGACTCTCAGATCTCTGTGTGGCCTGAAGTGGAGAGGGGCTGGTTACCTGAACAGGCCAGGCTCCTGACGGGCCGCTCTGGCTGGGTGGCACCTGTACCACATGGCACAGCAAACAGCTCCTGGTTGGCAATGGACCTTGGTTTTACCCACTGGGTCACCGCAGTCATCTTGCAGGGGGGGAGACACAGGGACAAGGTCATGTTTGTCCGACGCTTCAAACTGGCCTACAGCACCAACGGCTCTGACTGGAGCTACATACATGAGGAGAACAGCACCAAAGCTaagGTATTCATGGGGAACCAAAATCATGACACTCCAGAGGTACGTTCCTTCAAGCCACTGATGATGCGTTTCCTGCGGGTATATCCTGAGCGTGGGTCGCATGATGGCATGGCCCTGAGACTGGAGTTGTTGGGCTGTGACACCCAACgTGCTACTCCTCTTCCTCCTACCACTACAATGGTAACCACAGTGAGGGTAACTGCTAACATCCCAGCAACCAGCCCAGCAATTGCTGGCATCACCACAACAGAGGACTGTGATGATGAATCTGCAACTTGTCACAGCGGAACAGGCACAAGTGAAGACTATGAGCCTACAGGTACAGTGGCAGAGCCCATGGAATCTGCATATCTTTGGTTCGACTGCAATTTTGGCTGGTCAGACCATCCGTCTTTCTGTGGGTGGAGTCTAGAGAGCATCGGACAAGTGGACTGGCTCTTACAAAACCATGACATGCCCTCCAAACATCAACTGCCCAATGTGGATTACACAGGGGAACCTGGAAACTTCATCTACACTGCACTGACCAGAGATTCACTCTATCCAGAGACAGAGAAGCCATTAGAGCAAGAAATAGAGCAGGAGactcaaacaggaaggaagagaGGGATGGAAGGAGAAAGAACTGcaaaggcagaaagacagaacGAGACGGAGAGTAAAGTCAGATTGGCACGGTTGGTCAGTTTGCCCGTTACGTCTCCTGATGAAGATCTGTGTGTGTCATTCTGGTACCGGTTCACTGGAGAACACAAAGGTGCCCTACACATTTGGCAAAAGACAGAGGGAGGAGGGGAGGGAGTTGGAGAAAGAGGAGAGCTACAGGAAGaaggaaaagacagacagagggatggAAGTAAGAAAGAACAGGAGGTACTGCTCTGGAGGATGGAATGGCAAGAGACTAAAGGCTGGAAAGAAGGAAGGGTTCTGATGCCCCATGCTGATAAACCATACAAGGTGATTATTGAGGGCGTTGTTGACAGCACATTGTCTGGACATATCTCTCTGGATAATGTGAAAATTGTCCCTGAAATGAGTGCTGCTGAGTGTAAAGatccAGAGTTTGAGGTGACTACTGTTACAGCTAAACCTGaGTGTGATGTTGAGCAGAATTCTAAGGACTTTGTGTGGAGGTTCGGGCTGCGGGGTGGCTCCATGTTGAAGACACTGAACCCCATTCTGATCACCATCATCGTGATGAGTGCCGTGGGTGTGCTGCTAGGggctgtgtgtgttgcagtgctCTACTGTGCTTGCTCCCACAATCCTGAGCAAACCGTTTCTGCCCTTGAGAACTACAAGTTTGAGCTGGTTGATGGCCTCAAGCTCAAGCAGGAGAAAGTGAGCGCACAGAAATCGTACACAGAGGCATAAGAACCAATGCTATGCAAACTCTAAGAGaacatttaattaaagcttGTGACCTTTGACAGTTCAAGACTGACTCATGGTTTTCTCAGGAGATGCAGTGAGAGGGACTGACCTCCAGAGGGTACCCTAAACAAAAGACAATATACAGTTTACTGGTAATTAGCACCTGGTTGGTTGGTCTGATTTTATTTCTcgatttttaatacttggatgctgGTAATGTGACCACTCGTGTGGATTCCATCTATTTtgtggaaccttttttttctttaaagaagaGAACCATGTGTAGAGAGTggcatgtgcctgtgtgtgacTTGTGGCTTATGTTAAACTCAaatagtacctttttttttttttagatgtttttgtttcctttttacaTATGCTCTCAATACATATGGTCTCACTACAGTCCTCATCTGCCATTGCATTCTGCAGGTCGAAattcaaaactgaaaaaaaaaaaaaaagaaaatattgtatttttgtgcCCTGTTTCCCATTTTTGTGCTGTTATCTCCTTTAAACTATATACAGACAAGGTGGTAAATCAACtgacagaataaaaataatgttattaggTAAATTAGGTAAAGTCACTTAGGTCACATCAAATTGCAACACCGTCTGGAAAATTCCTGTTCCTGAGGTCTGCAGTTGTCTATCTCTCTGCCCTCACATATAACCAAAGCACATTTGTTCAGTTCTATTTATCCCACCTAACCACCAGGGGCAGTGTTTAAACACCCCCCCCCCGAAACCTTCTTGTACACATGAGCACATGTTAAGACCTTTACCACAAAGCCACATGACACGTGACTTTATGATGTTATGCAATGTCATCAGTGGTCGGTTTCCACTTTCTTCTTTTTGCCATGTACACACTGGGCTTTTTCAAGCTATCTGAGAAACAGCTTGTGTCTATGGTTGGAGCTACAGGTAAACCTGTCCTCCAAAGTTGGTGTTAGTGTCATACAAACTTAACAAGTTCTTCAATTGGATTAATTCATGAGGCACTTACCTCACATTCCTGAGCTTGCAAAGTTAATGGGTTCCATTTACATTCATATACAGGCTAGAGTAGGTTACCCTCCATCTTCCCTTGGCATACTGAGCCCTCATCTAGGCACCACAGCTCACGAGAAGGCCGCAAACATAATGGAATGGATTGCCCTCGTAATTCCACACTCATGATGCTGTGTTGTGTGCAAATTCCACTGCCTTGCATATGAAGACCGGAGAGAATCTTCCCTCCACCTCCCCATATCAACACAGAATGAGGTTCATCCTCTGTGTCTCCTTAGCAAAAGCCTTACAGGTGGCTTCACTGGAAAAAGTGTTATGTTCAGGCAAACAATGCCCAAACACTGAATACGGATGCACTGCATATGTTCTGGAGAACTCTTATGACATGGTCTTCCACATTGCACACACAGGCAGTGAACTACTGTTGCTTGCATTGGAGCCAGCactccaatcttcagctgttgATCCCTCtgtgacagagctgtgtgaAACCACACTCACAGCAGTGAGACACAGGATGACACCAATTGAATTTATAGATGACACCAGGCATGTTTGGCACAATCCCTGTTGGCAGACACATGCAATCAACCCTGCAAAATCTATGTTGTTTACCAGGGCTGGAAGGAGGAGCACAGGTGTCACAAACCCTTTGGGTTTATAACAGTGTTTCAGAAAGGAGTGAAGCCAAATTTTGTGAGAAGTTTCCAACGGGAGCAATGGTTATTGATGattgcattttatatatgtcACCATGTGACTTTGTGGTAAAGGTCTTGACATGtattgacatttaaaaaaaacagcctccTGGCAGTTATCCTGTGTTCAGTAAACAgggttatacagtatatgtacacTAACCATACTTTACCAGTTTTTTCATCTGCCagaataattacttttaatttacaTCAAACCACTCATCACTCAAGTTCCAGTCGTACATTTATTTGCTGATTAATTTATCAGTTTTTAGTCATTTCTAACAGGTTATATTTCAGGAGAAACACAAGAAAACCACTGTCCAGTCTTAATCTAACTCACTAACATACCCATTCATTCAACAACTACTACATTCCAAAGAGATGATAAAGTACTTGTtcttaattaatgtaataatgatgtttttgcattgtaaaattttatttagtgaAA

Function

GO:

id name namespace
GO:0030947 regulation of vascular endothelial growth factor receptor signaling pathway biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0006935 chemotaxis biological_process
GO:0001525 angiogenesis biological_process
GO:0001570 vasculogenesis biological_process
GO:0005515 protein binding molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU375688 lncRNA upstream 60214 8970161 ~ 8973355 (+) True G317200
TU375644 lncRNA upstream 74918 8958437 ~ 8958651 (+) True G317166
TU375617 lncRNA upstream 91234 8938718 ~ 8942335 (+) True G317139
TU375626 lncRNA upstream 129500 8903190 ~ 8904069 (+) True G317148
XR_004580314.1 lncRNA upstream 133696 8898269 ~ 8899873 (+) True LOC117599967
TU375897 lncRNA downstream 281515 9444709 ~ 9465969 (+) True G317395
TU375903 lncRNA downstream 337463 9500657 ~ 9500860 (+) True G317400
TU375904 lncRNA downstream 338098 9501292 ~ 9501840 (+) True G317401
TU376022 lncRNA downstream 542219 9705413 ~ 9705681 (+) True G317491
XR_004580302.1 lncRNA downstream 542726 9705920 ~ 9711900 (+) True LOC117599959
XM_034314912.1 mRNA upstream 6311 9009201 ~ 9027258 (+) False LOC113543050
XM_026941010.2 mRNA upstream 6311 9020536 ~ 9027258 (+) True LOC113543050
XM_026941401.2 mRNA upstream 141611 8815766 ~ 8891958 (+) True urb1
XM_026941402.2 mRNA upstream 141611 8815766 ~ 8891958 (+) False urb1
XM_034314628.1 mRNA upstream 220159 8811595 ~ 8813410 (+) True LOC117599964
XM_026941149.2 mRNA downstream 5217 9168411 ~ 9219101 (+) True LOC113543105
XM_034314596.1 mRNA downstream 369483 9532677 ~ 9642644 (+) False LOC113533645
XM_026925914.2 mRNA downstream 369485 9532679 ~ 9642644 (+) True LOC113533645
XM_034314571.1 mRNA downstream 625803 9788997 ~ 9827888 (+) True LOC113533145
XM_034314567.1 mRNA downstream 625803 9788997 ~ 9827888 (+) False LOC113533145
TU375607 other upstream 220749 8811957 ~ 8812820 (+) False LOC117599964
TU375135 other upstream 764371 8268709 ~ 8269198 (+) True G316745
TU375134 other upstream 769508 8263339 ~ 8264061 (+) True G316744
TU374748 other upstream 1337650 7695534 ~ 7695919 (+) True G316413
TU374286 other upstream 1898068 7133459 ~ 7135501 (+) True G316001
TU375892 other downstream 249129 9412323 ~ 9415164 (+) True G317390
TU376185 other downstream 796135 9959329 ~ 9977901 (+) False pip4p1a
trnar-ucu_12 other downstream 1024557 10187751 ~ 10187824 (+) True trnar-ucu_12
XR_004580322.1 other downstream 1373237 10536431 ~ 10562994 (+) False capn10
XR_004580323.1 other downstream 1373237 10536431 ~ 10562614 (+) False capn10

Expression Profile