Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003404407.2 |
| length | 535 |
| lncRNA type | inter_gene |
| GC content | 0.36 |
| exon number | 4 |
| gene id | LOC113543325 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 2942487 ~ 2945207 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU371354 | lncRNA | upstream | 152991 | 2789242 ~ 2789496 (+) | True | G313494 |
| XR_004580285.1 | lncRNA | upstream | 205899 | 2731215 ~ 2736588 (+) | True | LOC117599939 |
| TU371318 | lncRNA | upstream | 207103 | 2735119 ~ 2735384 (+) | True | G313465 |
| TU371292 | lncRNA | upstream | 267841 | 2674433 ~ 2674646 (+) | True | G313443 |
| TU370833 | lncRNA | upstream | 819053 | 2116324 ~ 2123434 (+) | True | G313052 |
| TU371493 | lncRNA | downstream | 130842 | 3076049 ~ 3076370 (+) | True | G313607 |
| TU371707 | lncRNA | downstream | 353891 | 3299098 ~ 3299306 (+) | True | G313796 |
| TU371743 | lncRNA | downstream | 535893 | 3481100 ~ 3489299 (+) | False | LOC113543208 |
| TU371775 | lncRNA | downstream | 579102 | 3524309 ~ 3524518 (+) | True | G313853 |
| TU371896 | lncRNA | downstream | 827863 | 3773070 ~ 3819909 (+) | True | G313949 |
| XM_026940933.2 | mRNA | upstream | 63772 | 2872529 ~ 2878715 (+) | True | klhl40a |
| XM_026941250.2 | mRNA | upstream | 71231 | 2860285 ~ 2871256 (+) | True | hhatla |
| XM_026941205.2 | mRNA | upstream | 107555 | 2808427 ~ 2834932 (+) | True | plcd1b |
| XM_026941204.2 | mRNA | upstream | 107555 | 2817742 ~ 2834932 (+) | False | plcd1b |
| XM_026941137.2 | mRNA | upstream | 214419 | 2718759 ~ 2728068 (+) | True | ralab |
| XM_026940823.2 | mRNA | downstream | 30439 | 2975646 ~ 2985302 (+) | True | bmi1b |
| XM_026940953.2 | mRNA | downstream | 69279 | 3014486 ~ 3019463 (+) | True | nebl |
| XM_026941475.2 | mRNA | downstream | 134809 | 3080016 ~ 3082751 (+) | True | nrn1b |
| XM_026941397.2 | mRNA | downstream | 353137 | 3298344 ~ 3317951 (+) | True | sall3a |
| XM_026941285.2 | mRNA | downstream | 478360 | 3423567 ~ 3489367 (+) | False | LOC113543208 |
| trnat-agu_12 | other | upstream | 53099 | 2889315 ~ 2889388 (+) | True | trnat-agu_12 |
| TU371295 | other | upstream | 266639 | 2675281 ~ 2675848 (+) | True | G313445 |
| TU371294 | other | upstream | 266639 | 2675322 ~ 2675848 (+) | False | G313445 |
| XR_004580351.1 | other | upstream | 280088 | 2655200 ~ 2662399 (+) | False | LOC117599997 |
| trnas-aga_13 | other | downstream | 680209 | 3625416 ~ 3625497 (+) | True | trnas-aga_13 |
| trnas-aga_14 | other | downstream | 680753 | 3625960 ~ 3626030 (+) | True | trnas-aga_14 |
| trnas-aga_16 | other | downstream | 682825 | 3628032 ~ 3628113 (+) | True | trnas-aga_16 |
| trnap-ugg_21 | other | downstream | 1001728 | 3946935 ~ 3947006 (+) | True | trnap-ugg_21 |
| XR_004580320.1 | other | downstream | 1647233 | 4592440 ~ 4692816 (+) | False | LOC113543063 |
