RNA id: XR_004576912.1


Basic Information

Item Value
RNA id XR_004576912.1
length 840
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC113525279
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 160505 ~ 164094 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATAGctatagctataaacagtcgttccctcaccacgtttcatgttactgagaaactgcaaagaagtgAATGTGGAAAGGTTCACTGGAGGGAACAGATTCGCAATTTATAGGAAGAATGGGGGAATCCCTAATTCATTCAGAGAAAACGTTAATGAAGCAATGAGCGGTGGTCCAGAATACAATTTAACCAAATACAACTGTATTGAGTTTGTCATGGATCTTCTTGAAGTTGATCTGAAGCATTCCATATGACGGGTGATTTTTTTCAGCCAACTCTAGAGGACTGCATGAAGATTGGACTCGGCACTAAACCAAGGGGCTTCAAAGTTGTCAAAAAGTTCTCTGATGTTGATGGTGGAAAAGCAAAGCTAGGAGACCTGTTTATCGTGGAAAGTGTGTTAAGTGGCATATCACCACGCTGGAGTGTGCTGCCGTGAAACTGGTCAGGAGATCATTCACTTCACACCGAAATCTACCGGATCATTTGAGTTCAGCGCAATGGCCACCAAGTCCACTTCCTGTGAAGGTCTCGTGAGCAAAGTGAACGTTAAAGGGTTCTCCTCAGGCAGCAAATTTGCAATTTATAGGAAGAAGATGGGAATCCCTGACTCATTCCAAAAAAGAGTCGATGAAGCAATGAGCCAAAGCCCAAAATATCAACTTTTAAAGTACAACTGTATTCATTTTGCCCTGGAGCTTTTATACGGAGATTTGGAGGCAAGAAACGTTCTCCTGATGTGTGCATGCTAATTACCGCATACATAACATGCTCactaatatattaatacactatatattaatataatatataattataatataataataaatataatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580289.1 lncRNA upstream 39027 118958 ~ 121478 (+) False LOC113525271
TU369786 lncRNA upstream 39173 116132 ~ 121332 (+) True LOC113525271
TU369784 lncRNA upstream 47397 112817 ~ 113108 (+) True G312179
TU369782 lncRNA upstream 48047 111771 ~ 112458 (+) True G312177
TU369801 lncRNA downstream 13749 177843 ~ 179540 (+) True G312193
TU369802 lncRNA downstream 13749 177843 ~ 266537 (+) False G312193
TU369804 lncRNA downstream 15581 179675 ~ 179974 (+) True G312194
TU369805 lncRNA downstream 16499 180593 ~ 183042 (+) True G312195
TU369779 lncRNA downstream 23011 187105 ~ 188110 (+) True G312175
XM_034314841.1 mRNA upstream 128650 21303 ~ 31855 (+) True kpna5
XM_034314842.1 mRNA upstream 129249 21279 ~ 31256 (+) False kpna5
XM_034314800.1 mRNA downstream 26223 190317 ~ 193534 (+) False pnrc2
XM_034297765.1 mRNA downstream 53833 217927 ~ 543043 (+) True LOC117595741
XM_034297764.1 mRNA downstream 53844 217938 ~ 543043 (+) False LOC117595741
XM_034297758.1 mRNA downstream 75184 239278 ~ 272041 (+) True dop1a
XM_034297756.1 mRNA downstream 75184 239278 ~ 272041 (+) False dop1a
TU369775 other upstream 65580 93899 ~ 94925 (+) True G312172
TU369774 other upstream 67590 92484 ~ 92915 (+) True G312171
TU369797 other downstream 10144 174238 ~ 175541 (+) True G312191
TU369780 other downstream 25445 189539 ~ 193234 (+) True pnrc2
TU369781 other downstream 25445 189539 ~ 193234 (+) False pnrc2
XR_004576918.1 other downstream 111065 275159 ~ 312728 (+) False snap91a
TU370232 other downstream 656461 820555 ~ 838522 (+) False jph1b

Expression Profile