RNA id: XR_004576915.1


Basic Information

Item Value
RNA id XR_004576915.1
length 1660
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC117595739
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13911571 ~ 13919146 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGACACTCGCCCTTCACGGTGTGAGGACAGCTGACCACGGCCGCTTCAGCCACAGCCGGGTGTTCTGATAACGCCGCCTCCACCTCGGCTGTGCTCAGCAAGTGACCTGGAGGAAGGCCgGATCAACTCTGCCTGTTCTAGCTCTTAATCTATATCATTTTACATGAAGGCAAAGCTGCTCTGTGAGCTCTCAGCCTCTCACCAGGTAGCCCTCGGCCTCTCCCTCCAGCTCCTCTCCGTGCTCATTCAGGATTGTGGGCTGCACACCGAAAAACGTAGATGGCATCAGTTCCACTCTTCTGGCAGCGGAGAACTGGCGAATGAACCCAGTGAACCCTGTCATGCCACGAAAACCAGTGAGTTCCAGTTAAAGCCTACAACAGAGACTGCAGTACTGATGACTGCTTCAACCACAGCCACCTAACAGGCCCTGAGTTTGGAGAACATCGAAATAACTAGCAGTCTGTACTGTTAGAACATGGTGGTGCAATCTGAAATCTGAATTACACAGATTACTGTGATAAATTACTGtgtcatgaaaaaaaagcatcatttGAGTATGATGTGCAATCTGCTGTGTCTGGGCTGGGAATTGTATAAAATTACAGACTTCCTGATTAAAATTGGGAAAGGTCTAATCACAAAACACCTCAAAACACTTTCTGGTTACTTTCCCTTATTTTgaactgttttcattttcaagaCCATGTATTGAAGTCTTAACAGGATCATTtctgggtggcatggtggtgggGCAGAGGGTAAAATTCCCAACTCACACTTCCAGGGTCCTTAGTTCAGTCGTGAACTTGCGCTAATCTGTGTGTGGGTTTTCACGTGTTCTCTGCGTGTGTCTGAAGGTCACATATTTTTGCAAGTTTGTGTTCTAAATTTTTGCTATTTCAAGAGCTAAAGGGAAATGTATTCTTTGGAAAGTCCTTTTTTATCATGTTAAATGCCGCATTCACATCGCTCTATAATGCCTTGTTAACACATCTAGCTAAATGGTGTCTCAGGCTCTGTTAACACCTAGTTCATGATCCTGAAGATTCTTTTTAaccacatgcatttatttacacttatgTACTGTAGTTATGCTATGCTATGCACATCAGCTCACACTTGACCACCAACTTCCTGATTGGGTCACGATTTTGCATGCTGTTTTAAAACCTCAATAGGATGTACTGTACAGGCTCAGAGGAGCATATGTACTTACACTTACAGAACATCTGGCTAACATGCAGCATATGCCCTGTTCACACTTTGGTTGTTTCATACTTCAAAATCCACATAATCCACAGAACTACAACAGATTTAAACCAATTGTGCAGATTATTTTGACTGTGTTTACACCTGCTCATTGTATGCGTCTTGTATAACCACATGCGTTTACACTTGTAGTCAAATTAGCCACATTGAAATCTGTTGCTCTAACCAATACATATGATTCAATTTAAATCTGTTTCAAACGTGTGCATGTTATTCAAGTTTATACCATATATATTGTAACATATCCTGTTGAagtcttgattctgattggtcagatggtgctGATTCATTCTTTACAACACCATCTCTGACTGTATTTCCAGCTGCAAGGTGTACATTAATAaactcattttaatatgttattgtatctataataacaacatacac

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576917.1 lncRNA upstream 1291 13904527 ~ 13910280 (+) True LOC117595740
TU378841 lncRNA upstream 1936 13908863 ~ 13909635 (+) True G319886
TU378818 lncRNA upstream 17130 13856965 ~ 13894441 (+) True G319867
TU378685 lncRNA upstream 321255 13589599 ~ 13590316 (+) True G319755
TU378293 lncRNA upstream 400844 13505106 ~ 13510727 (+) True G319415
TU378986 lncRNA downstream 98795 14017941 ~ 14018154 (+) True G320003
TU378987 lncRNA downstream 99683 14018829 ~ 14019036 (+) True G320004
TU378998 lncRNA downstream 161103 14080249 ~ 14126913 (+) False zmp:0000000521
TU378999 lncRNA downstream 161103 14080249 ~ 14127006 (+) False zmp:0000000521
TU379021 lncRNA downstream 218516 14137662 ~ 14140523 (+) True G320032
XM_026925299.2 mRNA upstream 13657 13837433 ~ 13897914 (+) True LOC113533270
XM_026925301.2 mRNA upstream 13657 13837433 ~ 13897914 (+) False LOC113533270
XM_026925302.2 mRNA upstream 15830 13837433 ~ 13895741 (+) False LOC113533270
XM_026925219.2 mRNA upstream 76756 13820665 ~ 13834815 (+) True rab12
XM_026925212.2 mRNA upstream 104313 13720966 ~ 13807258 (+) False LOC113533233
XM_026925273.2 mRNA downstream 13500 13932646 ~ 13947792 (+) True ndufv2
XM_034314762.1 mRNA downstream 30580 13949726 ~ 13985056 (+) True ankrd12
XM_034314763.1 mRNA downstream 30580 13949726 ~ 13985056 (+) False ankrd12
XM_026925092.2 mRNA downstream 69457 13988603 ~ 14003700 (+) True twsg1a
XM_026925567.2 mRNA downstream 87211 14006357 ~ 14015371 (+) True rnf126
XR_004580321.1 other upstream 15906 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 15906 13837433 ~ 13895665 (+) False LOC113533270
TU378000 other upstream 1138704 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 2338674 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 2362383 11549115 ~ 11549188 (+) True trnai-aau_17
TU379509 other downstream 908119 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 1949870 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 2010806 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 2181387 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 2192890 16112036 ~ 16120033 (+) False si:ch211-178n15.1

Expression Profile