Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004580280.1 |
| length | 362 |
| lncRNA type | inter_gene |
| GC content | 0.51 |
| exon number | 3 |
| gene id | LOC117599934 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 17525571 ~ 17537160 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU381408 | lncRNA | upstream | 41927 | 17481913 ~ 17483644 (+) | False | fuz |
| TU381407 | lncRNA | upstream | 43009 | 17481385 ~ 17482562 (+) | False | fuz |
| TU380963 | lncRNA | upstream | 564837 | 16958745 ~ 16960734 (+) | True | G321704 |
| TU380843 | lncRNA | upstream | 632547 | 16892813 ~ 16893024 (+) | True | G321602 |
| TU380827 | lncRNA | upstream | 665993 | 16792714 ~ 16859578 (+) | True | G321591 |
| TU381461 | lncRNA | downstream | 51912 | 17589072 ~ 17666213 (+) | False | npc1 |
| TU381471 | lncRNA | downstream | 94054 | 17631214 ~ 17631512 (+) | True | G322127 |
| TU381490 | lncRNA | downstream | 184778 | 17721938 ~ 17786701 (+) | True | G322146 |
| TU381586 | lncRNA | downstream | 317388 | 17854548 ~ 17855258 (+) | True | G322233 |
| TU381693 | lncRNA | downstream | 537169 | 18074329 ~ 18074748 (+) | True | G322324 |
| XM_026946305.2 | mRNA | upstream | 8204 | 17514697 ~ 17517367 (+) | True | c1ql3b |
| XM_026946271.2 | mRNA | upstream | 18184 | 17487387 ~ 17507387 (+) | True | gpt2l |
| XM_034314525.1 | mRNA | upstream | 18812 | 17487387 ~ 17506759 (+) | False | gpt2l |
| XM_026946285.2 | mRNA | upstream | 41894 | 17478834 ~ 17483677 (+) | True | fuz |
| XM_026946286.2 | mRNA | upstream | 41894 | 17478834 ~ 17483677 (+) | False | fuz |
| XM_026946216.2 | mRNA | downstream | 33490 | 17570650 ~ 17636609 (+) | True | egfra |
| XM_026946215.2 | mRNA | downstream | 103467 | 17640627 ~ 17665605 (+) | True | npc1 |
| XM_026946259.2 | mRNA | downstream | 305289 | 17842449 ~ 17853870 (+) | True | yme1l1b |
| XM_026946314.2 | mRNA | downstream | 323151 | 17860311 ~ 17872029 (+) | True | rab18b |
| XM_026946277.2 | mRNA | downstream | 428733 | 17965893 ~ 17979122 (+) | True | wacb |
| XR_004580277.1 | other | upstream | 41894 | 17478834 ~ 17483677 (+) | False | fuz |
| XR_004580278.1 | other | upstream | 41894 | 17478834 ~ 17483677 (+) | False | fuz |
| TU380835 | other | upstream | 673147 | 16851445 ~ 16852424 (+) | False | LOC117599970 |
| trnag-gcc_20 | other | upstream | 1338530 | 16186971 ~ 16187041 (+) | True | trnag-gcc_20 |
| trnag-gcc_19 | other | upstream | 1340004 | 16185497 ~ 16185567 (+) | True | trnag-gcc_19 |
| XR_003404718.2 | other | downstream | 33489 | 17570649 ~ 17631608 (+) | False | egfra |
| TU381774 | other | downstream | 689402 | 18226562 ~ 18227233 (+) | False | si:ch211-162e15.3 |
| TU381775 | other | downstream | 689402 | 18226562 ~ 18227136 (+) | False | si:ch211-162e15.3 |
| TU381842 | other | downstream | 878657 | 18415817 ~ 18422631 (+) | False | pex5lb |
| XR_004580282.1 | other | downstream | 1278849 | 18816009 ~ 18871360 (+) | True | slc44a5a |
