RNA id: XR_004580281.1


Basic Information

Item Value
RNA id XR_004580281.1
length 461
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id LOC117599936
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20981438 ~ 20990308 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTAGTGCtgtgtgtcactctgattgTGTTTCGCTTCATGGTTACTGCTGCTCCGGTCCTCATTTTGTTAGTGCATGTTTATGcttcttgttttgtttggttgttttgtttgtgtttctctggACCAATAGGATTTGAGGATTTGATCTGATGGATCTTACCGCcatcctctgtttctctcctccACTCAGAACATCCATCCAGTCCTGCTCGCTCTCCCAACCGCTCTCTCGCTCCACGATGTGAGACAGCTGCACTCTATCCAGCTGCAGTCATTTTCCCGACCGGACGCCGTAACCACGTCAACAACAGACCAGAGAAGACCAGATAACTCAGCAAGatattaaatCCTCACCTCTCGATCATGGTGCCATTGTGGATCATCCAGACATCGCAGCAGGTTCGAGCCAGAAGCATGGCAGCGATGAGCACCAGATACCccgactgcacacacacacac

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383698 lncRNA downstream 35370 20932834 ~ 20946068 (-) True G323907
TU383699 lncRNA downstream 35370 20933229 ~ 20946068 (-) False G323907
TU383701 lncRNA downstream 35370 20933229 ~ 20946068 (-) False G323907
TU383719 lncRNA downstream 116488 20864465 ~ 20864950 (-) True G323923
TU383685 lncRNA downstream 160343 20820489 ~ 20821095 (-) True G323898
XR_004580331.1 lncRNA upstream 149062 21139370 ~ 21146706 (-) True LOC117599984
TU383817 lncRNA upstream 207782 21198090 ~ 21198331 (-) True G323989
TU383831 lncRNA upstream 231868 21222176 ~ 21222600 (-) True G324001
XM_034297737.1 mRNA downstream 5066 20946136 ~ 20976372 (-) True LOC113524960
XM_034314686.1 mRNA downstream 37642 20893743 ~ 20943796 (-) True abca4b
XM_026911354.2 mRNA downstream 201287 20774032 ~ 20780151 (-) True amy2a
XM_034314622.1 mRNA downstream 223496 20732601 ~ 20757942 (-) True LOC113524963
XM_034314890.1 mRNA downstream 267421 20700898 ~ 20714017 (-) True sh3glb1b
XM_026911371.2 mRNA upstream 1579 20991887 ~ 20995639 (-) True LOC113524969
XM_034297795.1 mRNA upstream 131417 21121725 ~ 21134401 (-) False eif3k
XM_034297794.1 mRNA upstream 137926 21128234 ~ 21134401 (-) True eif3k
XM_026911898.2 mRNA upstream 144810 21135118 ~ 21137825 (-) True si:ch1073-429i10.3
XM_034314846.1 mRNA upstream 144810 21135118 ~ 21137039 (-) False si:ch1073-429i10.3
TU383705 other downstream 5101 20961573 ~ 20976337 (-) False LOC113524960
TU383704 other downstream 12269 20961426 ~ 20969169 (-) False LOC113524960
TU383689 other downstream 151334 20828026 ~ 20830104 (-) True G323902
TU383651 other downstream 267447 20710697 ~ 20713991 (-) False sh3glb1b
TU383528 other downstream 511969 20467610 ~ 20469469 (-) False LOC113546455
TU383785 other upstream 61899 21052207 ~ 21097709 (-) True G323963
TU383786 other upstream 144826 21135134 ~ 21137694 (-) False si:ch1073-429i10.3

Expression Profile