Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004580285.1 |
| length | 917 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 3 |
| gene id | LOC117599939 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 2731215 ~ 2736588 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU371292 | lncRNA | upstream | 56569 | 2674433 ~ 2674646 (+) | True | G313443 |
| TU370833 | lncRNA | upstream | 607781 | 2116324 ~ 2123434 (+) | True | G313052 |
| TU370836 | lncRNA | upstream | 754500 | 1974099 ~ 1976715 (+) | True | G313053 |
| TU370796 | lncRNA | upstream | 836268 | 1894702 ~ 1894947 (+) | True | G313016 |
| TU370724 | lncRNA | upstream | 1090489 | 1624563 ~ 1640726 (+) | True | LOC113543035 |
| TU371354 | lncRNA | downstream | 52654 | 2789242 ~ 2789496 (+) | True | G313494 |
| XR_003404407.2 | lncRNA | downstream | 205899 | 2942487 ~ 2945207 (+) | True | LOC113543325 |
| TU371493 | lncRNA | downstream | 339461 | 3076049 ~ 3076370 (+) | True | G313607 |
| TU371707 | lncRNA | downstream | 562510 | 3299098 ~ 3299306 (+) | True | G313796 |
| TU371743 | lncRNA | downstream | 744512 | 3481100 ~ 3489299 (+) | False | LOC113543208 |
| XM_026941137.2 | mRNA | upstream | 3147 | 2718759 ~ 2728068 (+) | True | ralab |
| XM_026941136.2 | mRNA | upstream | 3147 | 2718759 ~ 2728068 (+) | False | ralab |
| XM_026940928.2 | mRNA | upstream | 13517 | 2714439 ~ 2717698 (+) | True | c21h7orf25 |
| XM_034314885.1 | mRNA | upstream | 69794 | 2655200 ~ 2661421 (+) | False | LOC117599997 |
| XM_034297694.1 | mRNA | upstream | 76067 | 2645531 ~ 2655148 (+) | True | si:dkey-181m9.8 |
| XM_026941205.2 | mRNA | downstream | 71839 | 2808427 ~ 2834932 (+) | True | plcd1b |
| XM_026941204.2 | mRNA | downstream | 81154 | 2817742 ~ 2834932 (+) | False | plcd1b |
| XM_026941250.2 | mRNA | downstream | 123697 | 2860285 ~ 2871256 (+) | True | hhatla |
| XM_026940933.2 | mRNA | downstream | 135941 | 2872529 ~ 2878715 (+) | True | klhl40a |
| XM_026940823.2 | mRNA | downstream | 239058 | 2975646 ~ 2985302 (+) | True | bmi1b |
| TU371295 | other | upstream | 55367 | 2675281 ~ 2675848 (+) | True | G313445 |
| TU371294 | other | upstream | 55367 | 2675322 ~ 2675848 (+) | False | G313445 |
| XR_004580350.1 | other | upstream | 68816 | 2655200 ~ 2662399 (+) | True | LOC117599997 |
| XR_004580351.1 | other | upstream | 68816 | 2655200 ~ 2662399 (+) | False | LOC117599997 |
| XR_004580352.1 | other | upstream | 69794 | 2655200 ~ 2661421 (+) | False | LOC117599997 |
| trnat-agu_12 | other | downstream | 152727 | 2889315 ~ 2889388 (+) | True | trnat-agu_12 |
| trnas-aga_13 | other | downstream | 888828 | 3625416 ~ 3625497 (+) | True | trnas-aga_13 |
| trnas-aga_14 | other | downstream | 889372 | 3625960 ~ 3626030 (+) | True | trnas-aga_14 |
| trnas-aga_16 | other | downstream | 891444 | 3628032 ~ 3628113 (+) | True | trnas-aga_16 |
| trnap-ugg_21 | other | downstream | 1210347 | 3946935 ~ 3947006 (+) | True | trnap-ugg_21 |
