RNA id: XR_004580295.1


Basic Information

Item Value
RNA id XR_004580295.1
length 780
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id LOC117599954
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 1089858 ~ 1104324 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgacttTTGGCTTCAGCATCAGTCCGACATCTTTATTAATGCAGTGGAGATGAATATGGAGCTGAGCTTCATGGCGCAGAGGAAGTGGCCTGTCTCCTCCGCTTTTTGTTCCGCgataatgagcgagccagatgCTGGAGTGTgaaagaggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggaggagggacatcacaccacatcactcCTGTCCTTCATCTACACCATCAACACGTCAGGGAGTAAAACCTCTTCACCACCACATCACACCTCatcaGTGCAGAGATGATCCTCCTTCAGCGTCCACACCTGCGATCTGAAAGAACTCACACTGTTACTCTGAGCTTCGTCTTATAAAACTACATCTGTAAAAATCATGTGCAGTTTCCAAGTCCTGGTTGTAGGACACAGTTGGACTGTCGAGACCTTTCTGGAAGTTCAGCGTCCCGCTGCTCTGTCTACATCTGAACAACAAAAGGTGGAAGAAGAGGGCCTCATCAACACCTCGAGCGGCGCCATAATTAACCGACTCCTGAGGTGGATGATAACAGGCTCATGATCTCCGCAGAGTTTACGCTGCCTTCAAGTCAGAAATATCGTAATTATGAGGTGAGCGCAGTTGAATGACACGACAATGCCATAATTACGACTCAGGAACTCGTATCTGTCTATGAACAAGTTCGGGGGCGTGTCAATAACGAAAAGTCATGGCGGCTGCTCACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580327.1 lncRNA upstream 109807 976621 ~ 980051 (+) True LOC117599981
TU370266 lncRNA upstream 183412 906234 ~ 906446 (+) True G312540
TU370257 lncRNA upstream 203744 883404 ~ 886114 (+) True G312534
TU370250 lncRNA upstream 213978 875663 ~ 875880 (+) True G312531
TU370220 lncRNA upstream 223137 862387 ~ 866721 (+) True G312509
XR_004580318.1 lncRNA downstream 259052 1363376 ~ 1370691 (+) True LOC117599969
TU370578 lncRNA downstream 259912 1364236 ~ 1368869 (+) False LOC117599969
TU370650 lncRNA downstream 417977 1522301 ~ 1522511 (+) True G312877
XR_004580341.1 lncRNA downstream 520239 1624563 ~ 1662193 (+) False LOC113543035
XR_004580340.1 lncRNA downstream 520239 1624563 ~ 1640641 (+) False LOC113543035
XM_026940830.2 mRNA upstream 23391 1053868 ~ 1066467 (+) True cnpy1
XM_034314541.1 mRNA upstream 23391 1053868 ~ 1066467 (+) False cnpy1
XM_034314540.1 mRNA upstream 23391 1053895 ~ 1066467 (+) False cnpy1
XM_026940831.2 mRNA upstream 23391 1054144 ~ 1066467 (+) False cnpy1
XM_026940965.2 mRNA upstream 77666 1003909 ~ 1012192 (+) True shhb
XM_034314536.1 mRNA downstream 24585 1128909 ~ 1147376 (+) True paxip1
XM_026940999.2 mRNA downstream 246939 1351263 ~ 1357482 (+) True cahz
XM_034314849.1 mRNA downstream 783426 1887750 ~ 1935629 (+) True cdh6
XM_026941232.2 mRNA downstream 797977 1902301 ~ 1935629 (+) False cdh6
XM_026941180.2 mRNA downstream 861416 1965740 ~ 1976354 (+) False c21h5orf22
TU370232 other upstream 251336 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 777130 275159 ~ 312728 (+) False snap91a
TU369780 other upstream 896624 189539 ~ 193234 (+) True pnrc2
TU369781 other upstream 896624 189539 ~ 193234 (+) False pnrc2
TU369797 other upstream 914317 174238 ~ 175541 (+) True G312191
TU370320 other downstream 24601 1128925 ~ 1131683 (+) False paxip1
TU370328 other downstream 27559 1131883 ~ 1136020 (+) False paxip1
XR_003404390.2 other downstream 861416 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 1028890 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 1077655 2181979 ~ 2185677 (+) True G313112

Expression Profile