Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004580298.1 |
| length | 231 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 3 |
| gene id | LOC117599956 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 4884210 ~ 4893278 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU372681 | lncRNA | upstream | 37493 | 4846192 ~ 4846717 (+) | True | G314636 |
| TU372673 | lncRNA | upstream | 83107 | 4800652 ~ 4801103 (+) | True | G314628 |
| TU372656 | lncRNA | upstream | 95796 | 4788100 ~ 4788414 (+) | False | pou3f2b |
| TU372650 | lncRNA | upstream | 104065 | 4779938 ~ 4780145 (+) | True | G314609 |
| TU372431 | lncRNA | upstream | 122115 | 4688969 ~ 4762095 (+) | False | LOC113543063 |
| TU372728 | lncRNA | downstream | 84743 | 4978021 ~ 4978966 (+) | True | G314675 |
| TU372866 | lncRNA | downstream | 229420 | 5122698 ~ 5123402 (+) | True | G314785 |
| TU372867 | lncRNA | downstream | 323094 | 5216372 ~ 5216588 (+) | False | kpna4 |
| TU372881 | lncRNA | downstream | 327368 | 5220646 ~ 5221823 (+) | True | G314800 |
| TU372889 | lncRNA | downstream | 430046 | 5323324 ~ 5323675 (+) | True | G314807 |
| XM_026941328.2 | mRNA | upstream | 94375 | 4787848 ~ 4789835 (+) | True | pou3f2b |
| XM_026941049.2 | mRNA | upstream | 191394 | 4592445 ~ 4692816 (+) | False | LOC113543063 |
| XM_026941051.2 | mRNA | upstream | 191639 | 4592441 ~ 4692571 (+) | True | LOC113543063 |
| XM_026941052.2 | mRNA | upstream | 195188 | 4592442 ~ 4689022 (+) | False | LOC113543063 |
| XM_026941235.2 | mRNA | upstream | 293254 | 4583027 ~ 4590956 (+) | True | bud23 |
| XM_026941103.2 | mRNA | downstream | 8192 | 4901470 ~ 4958121 (+) | True | LOC113543089 |
| XM_026940941.2 | mRNA | downstream | 138971 | 5032249 ~ 5036445 (+) | True | LOC113543019 |
| XM_026941160.2 | mRNA | downstream | 166752 | 5060030 ~ 5070433 (+) | False | rabgef1l |
| XM_034314758.1 | mRNA | downstream | 166897 | 5060175 ~ 5070433 (+) | True | rabgef1l |
| XM_026941161.2 | mRNA | downstream | 177340 | 5070618 ~ 5073139 (+) | True | LOC113543113 |
| XR_004580320.1 | other | upstream | 191394 | 4592440 ~ 4692816 (+) | False | LOC113543063 |
| trnap-ugg_21 | other | upstream | 937204 | 3946935 ~ 3947006 (+) | True | trnap-ugg_21 |
| trnas-aga_16 | other | upstream | 1256097 | 3628032 ~ 3628113 (+) | True | trnas-aga_16 |
| trnas-aga_14 | other | upstream | 1258180 | 3625960 ~ 3626030 (+) | True | trnas-aga_14 |
| trnas-aga_13 | other | upstream | 1258713 | 3625416 ~ 3625497 (+) | True | trnas-aga_13 |
| TU372694 | other | downstream | 43770 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
| TU372695 | other | downstream | 43770 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
| TU372696 | other | downstream | 43770 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
| TU372849 | other | downstream | 194823 | 5088101 ~ 5091097 (+) | False | sptssb |
| trnat-agu_13 | other | downstream | 326267 | 5219545 ~ 5219618 (+) | True | trnat-agu_13 |
