Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004580306.1 |
| length | 362 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 3 |
| gene id | LOC117599962 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 12761836 ~ 12763727 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU377905 | lncRNA | upstream | 133946 | 12627675 ~ 12627890 (+) | True | G319087 |
| XR_004580339.1 | lncRNA | upstream | 136082 | 12622299 ~ 12625754 (+) | True | LOC117599992 |
| XR_004580336.1 | lncRNA | upstream | 189429 | 12559513 ~ 12572407 (+) | True | LOC117599989 |
| TU377521 | lncRNA | upstream | 689649 | 12063884 ~ 12072187 (+) | True | G318725 |
| TU377493 | lncRNA | upstream | 736393 | 12025208 ~ 12025443 (+) | True | G318697 |
| TU378003 | lncRNA | downstream | 1328 | 12765055 ~ 12803019 (+) | True | G319170 |
| TU378001 | lncRNA | downstream | 9371 | 12773098 ~ 12779233 (+) | False | G319170 |
| TU377999 | lncRNA | downstream | 11712 | 12775439 ~ 12791339 (+) | False | G319170 |
| TU378034 | lncRNA | downstream | 41795 | 12805522 ~ 12805732 (+) | True | G319198 |
| TU378126 | lncRNA | downstream | 258600 | 13022327 ~ 13023135 (+) | True | G319276 |
| XM_034297705.1 | mRNA | upstream | 333305 | 12416510 ~ 12428531 (+) | True | LOC113533522 |
| XM_026925818.2 | mRNA | upstream | 1138991 | 11596699 ~ 11622845 (+) | False | pax3a |
| XM_026925819.2 | mRNA | upstream | 1138991 | 11596700 ~ 11622845 (+) | True | pax3a |
| XM_026925817.2 | mRNA | upstream | 1138991 | 11596700 ~ 11622845 (+) | False | pax3a |
| XM_026925732.2 | mRNA | upstream | 1217111 | 11535133 ~ 11544725 (+) | True | snorc |
| XM_034314599.1 | mRNA | downstream | 18810 | 12782537 ~ 12796824 (+) | False | LOC113533470 |
| XM_034314598.1 | mRNA | downstream | 28408 | 12792135 ~ 12796824 (+) | True | LOC113533470 |
| XM_026924981.2 | mRNA | downstream | 204587 | 12968314 ~ 12982849 (+) | True | LOC113533117 |
| XM_026925860.2 | mRNA | downstream | 241067 | 13004794 ~ 13014554 (+) | True | abhd17aa |
| XM_026925861.2 | mRNA | downstream | 242052 | 13005779 ~ 13014554 (+) | False | abhd17aa |
| trnag-ccc_6 | other | upstream | 1188939 | 11572827 ~ 11572897 (+) | True | trnag-ccc_6 |
| trnai-aau_17 | other | upstream | 1212648 | 11549115 ~ 11549188 (+) | True | trnai-aau_17 |
| trnap-agg_14 | other | upstream | 1213657 | 11548108 ~ 11548179 (+) | True | trnap-agg_14 |
| TU377149 | other | upstream | 1292337 | 11467299 ~ 11469499 (+) | True | G318439 |
| XR_004580315.1 | other | upstream | 1300768 | 11399884 ~ 11461068 (+) | False | per2 |
| TU378000 | other | downstream | 1328 | 12765055 ~ 12772867 (+) | False | G319170 |
| XR_004580321.1 | other | downstream | 1073706 | 13837433 ~ 13895665 (+) | False | LOC113533270 |
| XR_003403405.2 | other | downstream | 1073706 | 13837433 ~ 13895665 (+) | False | LOC113533270 |
| TU379509 | other | downstream | 2063538 | 14827265 ~ 14828771 (+) | False | ly97.3 |
| TU380255 | other | downstream | 3105289 | 15869016 ~ 15870995 (+) | True | G321088 |
