RNA id: XR_004580327.1


Basic Information

Item Value
RNA id XR_004580327.1
length 822
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC117599981
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 976621 ~ 980051 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCAACGTCAACACACTTCTCCAGACGATTCTAGCGCTTTCCATGACATGCTTTACTTCAGGctctATTCCGACAGCCCCGCCCCTCtcctatgattggctagttcCTGTTACACCGACGGAGCGTCCAATCAGAATCGAACTACCACCCAATCCCTGGGCCAGACGCGGAAATTGCCGGAATACGGGTAGGAAAAGAATAACGCCTGACAGAAAAAAACGGGGCAGTTTACTAAACGTTTACTGCACGTAGCTCGAGTATGTAAGGCACCCTgagagaaatgcagaaaaaaaaccaaaatggcTATCGAGTTAAAATCCACACACAGCAATAAGCACAtacctgtttgttttttcagcgGCAGGAGCTTTAACTCTTCACCACTGCTACACGGAATTATCCTTAAACAGcgtttttttcttcaaagatAAACAGTAGCTCGGTTTGACGCATTCACCGGAAATGCTGCTGATAACCTGCAGATTACACACTCGGAACGCCGCGAGCTCCTGTGATTACATGCAGATCATCAGTGAGAGGTTCCTCCTCCTGTGGGAACATCAAACGGAGGCGAATACGGACAGTATCTATTTATCCTGCAGGCTGTAAAAGCtgacttatgcaaccaggtttgGAGAGAACAATGAAGTGGTTTTGCTTTTCTGATTTCTACACCAGGAGCTGATCTTGACTGGCTccgtcttctctctctctactgcaCTATACGTGGCGTTTATAGTGGACTATTTATCAACAATAAAGCCATGTTGGATTAATCATAACTTAACTTTGTGCTCAGTTTGtttagcaggtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370266 lncRNA upstream 70175 906234 ~ 906446 (+) True G312540
TU370257 lncRNA upstream 90507 883404 ~ 886114 (+) True G312534
TU370250 lncRNA upstream 100741 875663 ~ 875880 (+) True G312531
TU370220 lncRNA upstream 109900 862387 ~ 866721 (+) True G312509
TU370234 lncRNA upstream 153875 821262 ~ 822746 (+) True G312517
XR_004580295.1 lncRNA downstream 109807 1089858 ~ 1104324 (+) True LOC117599954
XR_004580318.1 lncRNA downstream 383325 1363376 ~ 1370691 (+) True LOC117599969
TU370578 lncRNA downstream 384185 1364236 ~ 1368869 (+) False LOC117599969
TU370650 lncRNA downstream 542250 1522301 ~ 1522511 (+) True G312877
XR_004580341.1 lncRNA downstream 644512 1624563 ~ 1662193 (+) False LOC113543035
XM_026941207.2 mRNA upstream 11004 946792 ~ 965617 (+) True trpa1a
XM_026940929.2 mRNA upstream 74997 898058 ~ 901624 (+) True tmem70
XM_034314625.1 mRNA upstream 74997 898218 ~ 901624 (+) False tmem70
XM_026941381.2 mRNA upstream 102855 868721 ~ 873766 (+) True rdh10b
XM_026941377.2 mRNA upstream 129604 820530 ~ 847017 (+) True jph1b
XM_026940965.2 mRNA downstream 23858 1003909 ~ 1012192 (+) True shhb
XM_026940830.2 mRNA downstream 73817 1053868 ~ 1066467 (+) True cnpy1
XM_034314541.1 mRNA downstream 73817 1053868 ~ 1066467 (+) False cnpy1
XM_034314540.1 mRNA downstream 73844 1053895 ~ 1066467 (+) False cnpy1
XM_026940831.2 mRNA downstream 74093 1054144 ~ 1066467 (+) False cnpy1
TU370232 other upstream 138099 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 663893 275159 ~ 312728 (+) False snap91a
TU369780 other upstream 783387 189539 ~ 193234 (+) True pnrc2
TU369781 other upstream 783387 189539 ~ 193234 (+) False pnrc2
TU369797 other upstream 801080 174238 ~ 175541 (+) True G312191
TU370320 other downstream 148874 1128925 ~ 1131683 (+) False paxip1
TU370328 other downstream 151832 1131883 ~ 1136020 (+) False paxip1
XR_003404390.2 other downstream 985689 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 1153163 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 1201928 2181979 ~ 2185677 (+) True G313112

Expression Profile