RNA id: XR_004580328.1


Basic Information

Item Value
RNA id XR_004580328.1
length 385
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC117599982
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3888027 ~ 3895685 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTGCCTTTTCAATGGAAGACAACGTGGCCGAATCTCAAACGCCGCCCTACTCCCTGCTCAAGGGCCCTACCTAGGAAGCAAAAATAATGGTTCCTGCAGCCTACATaggagactgtttttccaatatCGTGGCATTTGGGATGCAGCCCGTATTTCTCGCCACGCTTTCTCTTCCAACACGGCATGGCGAAAAGATTCAGCAAACCGGATGTCTGATATGAAGAGAATCTAATTTTCAACAGTGTGGCAAGCAAACAGGCCAAAGCGGTGCGTTTTATTACTATACAATGGAAAATGAAGCATGACTCCATGATAAATCTTGGGCCACATCCTGTGAAATCCCGAGCTGAGGATCTCCGAGCGAGAGGAGGAGgatgggaggag

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0019843 rRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU371944 lncRNA upstream 41932 3845857 ~ 3846095 (+) True G313990
TU371896 lncRNA upstream 68118 3773070 ~ 3819909 (+) True G313949
TU371923 lncRNA upstream 79337 3807148 ~ 3808690 (+) True G313975
TU371775 lncRNA upstream 363509 3524309 ~ 3524518 (+) True G313853
TU371743 lncRNA upstream 398728 3481100 ~ 3489299 (+) False LOC113543208
TU372207 lncRNA downstream 100817 3996502 ~ 4000314 (+) True G314222
TU372364 lncRNA downstream 394569 4290254 ~ 4293729 (+) True G314362
TU372366 lncRNA downstream 399180 4294865 ~ 4295074 (+) True G314364
TU372412 lncRNA downstream 483952 4379637 ~ 4384865 (+) True G314402
TU372416 lncRNA downstream 621916 4517601 ~ 4527820 (+) True G314404
XM_026941277.2 mRNA upstream 71173 3813253 ~ 3816854 (+) True pmvk
XM_026941244.2 mRNA upstream 225340 3647747 ~ 3662687 (+) True nt5c3a
XM_026941245.2 mRNA upstream 225340 3656034 ~ 3662687 (+) False nt5c3a
XM_034314852.1 mRNA upstream 241355 3642315 ~ 3646672 (+) True LOC113543357
XM_026941367.2 mRNA upstream 364814 3502067 ~ 3523213 (+) True atg5
XM_026940992.2 mRNA downstream 67070 3962755 ~ 3968351 (+) False tagln
XM_026940991.2 mRNA downstream 67070 3962755 ~ 3968351 (+) False tagln
XM_026940989.2 mRNA downstream 67071 3962756 ~ 3968351 (+) True tagln
XM_026940990.2 mRNA downstream 67072 3962757 ~ 3968351 (+) False tagln
XM_034314876.1 mRNA downstream 279108 4174793 ~ 4183429 (+) True LOC113543359
trnas-aga_16 other upstream 259914 3628032 ~ 3628113 (+) True trnas-aga_16
trnas-aga_14 other upstream 261997 3625960 ~ 3626030 (+) True trnas-aga_14
trnas-aga_13 other upstream 262530 3625416 ~ 3625497 (+) True trnas-aga_13
trnat-agu_12 other upstream 998639 2889315 ~ 2889388 (+) True trnat-agu_12
TU371294 other upstream 1212179 2675322 ~ 2675848 (+) False G313445
trnap-ugg_21 other downstream 51250 3946935 ~ 3947006 (+) True trnap-ugg_21
XR_004580320.1 other downstream 696755 4592440 ~ 4692816 (+) False LOC113543063
TU372694 other downstream 1041363 4937048 ~ 4958120 (+) False LOC113543089
TU372695 other downstream 1041363 4937048 ~ 4958120 (+) False LOC113543089
TU372696 other downstream 1041363 4937048 ~ 4958120 (+) False LOC113543089

Expression Profile