RNA id: XR_004580336.1


Basic Information

Item Value
RNA id XR_004580336.1
length 3158
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC117599989
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 12559513 ~ 12572407 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttagcttagcctgttagctagctagctagtcgtgtgagtgagagagagagggagagagagacagacgttGCTAAAGTTCGGTGCTGTGCCTCAAGATGCCCGCGATGTTGGAAAAGGGTACGACggagatttcagggaaaagaagaggcagaaactcgCTCATGGCTAGATCTGCCTGGCAGATGTAGGGTAAGCAAGGGCGGATATTACAGCCAAGCACAGTAATCTTCCTTCTGCTTTCGTCTGAGCTGGGTGAGCCCTCAAGTCTCGGCCAACCAAACACAGAGCCTGCCCATAAAGTAAGAAGAAGTCACGTCAGGATTAGGTTGGATCACTGCTGTGAACAACTGAGAACTCCAGATGATGCGTAACAGCGAGCCGTTCAAGTGCCAAGGATTTGCGTTACAGCTGGACACTGCTACTGGCCTTGCAATCCACCCTGATGAACTCCTTGCTGACAGAATCAAGCATGTTGCCAGTCAAGCCTCAGTCACCACCAAGAAGGAGACATGGCTCACTACTAAGCCAGGCAAATCGGCAACTGACCACCTCTGAACATCAGTATCACCTGGAAGGTAATCTTATTTCTCAGTGCATGATCCAACACTTTCCAAGAAAGGCTCTTCCTATAAGACAGCTTGTGATGAGGTGAACTGGTGAGTACATTCCTTGCACATGTCCTTACCATAAAATCATTTTCCTGTTCTATTCCACTATGTTTTTCCTTTCAATGCTAATTGATAATGATGCAGCTGTAAACTTCGTAGATTTTAACACAGTCTAATGTACAGCCTTGAAAACCGCATTCCACAAGCTCTGGATGGAAAACCAGTAATCATCATCCATTAAACTGTCCCAATACACACTGACAACTGTGCTGTGCCCTCCTTATCAATGAATCTCCTAAGTACCCTATTGTTTTGGGATTGCCATAGCTGCAGACTCATAAACCAAGAATCTCCTGGCCAGAATACAAAATTATAGCCTGGTATCTCCAATCTCCCCAGTGCCTGAAACCTGATCAGGACACTATGAAACTTTGGTAATTCCACATAGCCTGGTCAGCAAGTCCTCTGTGTTACAAGCATTTGTCCAAAGTACCCAGGGATTTGCCCAAAGTACCAGTGTTCCactgtgtttttcctttcagtGCTCATTGATAATGATGCAGCTATAAACTTCATAGATCTTAACACTGTCTAACGTACAGCCCTTGTAAACTCCAGTCCACATTCCACAAGCTCTGGATGGAAAACTAGGTGTTATCATCTATCAAACTGTCCCAATACACACTGACAGCTGTGCTGTGCCCTCCTTATCAATGAATCTCCTAAATACCCCATTGTTTTGGGATTGCCATAGCTGCAGACCCATAAACCAAGAATCTCCTGGCCAGAACACAAAATTATAGCCTGGTCTCTCCAATCTCCCCAGTGCCTGAAACCTGATCAGATCAGGACACTATGAATCTTTGGTAATTCCATATGGCCTGGTCAGCAAGTCCTCTTTGTTACAGGCATTTGTCCAAAGTACCCAGAATGCTACCCACTTCCAGTTCCTAAATGCTTCTGGTCCCATGTTGCCACTGATGTTGTCACAGACATGTCCTTTTCCCAGGACATGACATCCATTTTAGTTGTTGTTGACAGTTTTTCAAAATCCCTTAGACTTACATCTGTCACTGACACACAGCTTTTGAAACTGCTGAACTACtatttaaattatgtattttgGTATCTCGAGGGTATAGTATCTGTGACATCCCATGAGACAAATATGCACAAAAGTTGGACGGTCAAGCCGCAACACAGCTCACACCCTGTCAATGTGTGCTCAGCTATCAACCTCCCCTATTCCCCTGGAATGCCATGCCCATCAATGCACCTGCTGGACGAATAGTTCAAGAAAAATAAAGGCACATGGCTGAAGGCCCCAGATGCCTGTCCATGAAAGATCTCTGTCCATTTGGAGGTGCACTTCTCTCTGCCTGTTGTGACAAGGACACACAACATTACTACCAGTCTCGACAAATTTACTGTGAACATAGGAGACAAAGAAATAGCTGATATAAATGAGAACACATAAAAATTGCTGATATAAATGAGAAAACAAGAATACATAAAATGCATTTGTTGGGAATTCTGAAAGTGAAATCTAATTGTAACTTCTTATGACAGTGTCACTGTTTGCATGCACACTCctgacaatatatttttttctgactcGGCTCCCTTTTTGCCACCCTTATCCAGCTTATTGCCTGCACTAATGGATGCAAAAATACATATACAGCATGTGGAAACATATGGACTGATGTTTGGAACATCGGTCACTGCACTATGTGTTTATGTTCAAATTAATAGTTGAgaatatttacagtacatacagtaataCCAATAATGCACTAATACATTTGACAAGGACCCATTGCAATGAAATAGTTGCCTATTGATGGCGAGACGTTAGCAATAGCGTTGGTATTCAAAGGAATGTGACTAAGCTGTCACAGAAATTAATCATGTATTCTGCAAATAAACCATGTAGTTTcaggatgaaaataaaatcGACCTTTTTCTCCTCAAACAAGGAGTGAAAGAAAACACAGGTGTCTTGCTGGTGTGTGTAACAGTGGCAGGTATGGAGAAAAGAAGGATGTCATGCAGGGAGACAGACAagttcataaacacacacagctgccacTTCCTGTGATGCTAAAGTCTGACACTGATGTAGTCTGGCTGCCACCAGAGCCAGCTGTCACGtctcacactccacactcactttcacactgtctcacacagagagagagagagagagagagagagagagagatacagagatacagagatacagATAGACATAGGATTTGTGTCACTTCAACCTGGTAATGTGAACATAGCTTAATTTAGCCATTAATGAATTAACAAACAGTTTACTGAAAAAATTCCTATGCAAGTTGGGACACTAACCTAATTCACTGTGTAATGaatctttttgtgtttgtttctaaaTTACCTTGGAACAACTTTGTTTAGTGAAGATAAAAAGCTCCACAGAGCCTAGATGAGGAATTTCTTCATTTGTCACCTGGAAAACTGTGTTCTCAGGCTAAGAATGTTTATCTTTTGCCCTAGTCCAATCTGCTAGTCGGCACATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377521 lncRNA upstream 487326 12063884 ~ 12072187 (+) True G318725
TU377493 lncRNA upstream 534070 12025208 ~ 12025443 (+) True G318697
TU377478 lncRNA upstream 688547 11870767 ~ 11870966 (+) True G318683
XR_004580299.1 lncRNA upstream 713102 11833308 ~ 11846411 (+) True LOC117599957
TU377452 lncRNA upstream 760332 11798958 ~ 11799181 (+) True G318658
XR_004580339.1 lncRNA downstream 49892 12622299 ~ 12625754 (+) True LOC117599992
TU377905 lncRNA downstream 55268 12627675 ~ 12627890 (+) True G319087
XR_004580307.1 lncRNA downstream 189429 12761836 ~ 12763727 (+) True LOC117599962
XR_004580306.1 lncRNA downstream 189429 12761836 ~ 12763727 (+) False LOC117599962
TU378003 lncRNA downstream 192648 12765055 ~ 12803019 (+) True G319170
XM_034297705.1 mRNA upstream 130982 12416510 ~ 12428531 (+) True LOC113533522
XM_026925818.2 mRNA upstream 936668 11596699 ~ 11622845 (+) False pax3a
XM_026925819.2 mRNA upstream 936668 11596700 ~ 11622845 (+) True pax3a
XM_026925817.2 mRNA upstream 936668 11596700 ~ 11622845 (+) False pax3a
XM_026925732.2 mRNA upstream 1014788 11535133 ~ 11544725 (+) True snorc
XM_034314599.1 mRNA downstream 210130 12782537 ~ 12796824 (+) False LOC113533470
XM_034314598.1 mRNA downstream 219728 12792135 ~ 12796824 (+) True LOC113533470
XM_026924981.2 mRNA downstream 395907 12968314 ~ 12982849 (+) True LOC113533117
XM_026925860.2 mRNA downstream 432387 13004794 ~ 13014554 (+) True abhd17aa
XM_026925861.2 mRNA downstream 433372 13005779 ~ 13014554 (+) False abhd17aa
trnag-ccc_6 other upstream 986616 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 1010325 11549115 ~ 11549188 (+) True trnai-aau_17
trnap-agg_14 other upstream 1011334 11548108 ~ 11548179 (+) True trnap-agg_14
TU377149 other upstream 1090014 11467299 ~ 11469499 (+) True G318439
XR_004580315.1 other upstream 1098445 11399884 ~ 11461068 (+) False per2
TU378000 other downstream 192648 12765055 ~ 12772867 (+) False G319170
XR_004580321.1 other downstream 1265026 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other downstream 1265026 13837433 ~ 13895665 (+) False LOC113533270
TU379509 other downstream 2254858 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 3296609 15869016 ~ 15870995 (+) True G321088

Expression Profile