RNA id: XR_004580339.1


Basic Information

Item Value
RNA id XR_004580339.1
length 1593
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC117599992
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 12622299 ~ 12625754 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTTTGATATGAGGCTGTTCTTTGAATATACTGTTTTAGTTGTTCTACTTCCTATTGGCTAGTAAGCTCATGTGATTTAAGATCATAGTTCAATTTCAGGCTTGTTGTGCAGTACTCTGAGCAAAGTTTCACATTCCCTGTGGTGACTATCAAAATATCTTTCACATCCTCTCTTGATGAGTCTTGGAAAAGCATTGCTTGATCCCGCTCTCTCACCGCCTAGGccggggtttgattcctgggcagggaaccaacccagacACTTGGATTGTACTCTCAGTGCCGATCCtaagcccagataaaatgggagggttgcatcaggaagggcatccggtgtaaaacctgtgccaaatcacaACATGCgcaccaatgatctgctgtggtgacccctaagaAGAGCACCCGAAAGAACAACACCATTTCCTTCATCTGTTTATTCTATACACAGTGTTTACAAACATGTTTACTTGTATTGAAAGACACTGTGCAGcaagctgaatgttttttttttatttactgttttggAGTTTTGcttaagaaagagaaaagagatgaAAGAGGATAAAATTGGTCCTGAAAAATTATCGTGGATTTGCCccaggtgtaaatgagtgtgcaATGCAGGCATGAATGGTGAcatgcgatggactggcattatacccagtgttcctggggtaAGCTCCATGTCTACAGTGACCCAGAAAGGATAAATTGATGCACAGTGGTTTCTGTATTATTGTTTTCTATGCAGAATTTAGTAAAACATGAGTGTGAgacatgtgtgcatgtgaaagCAGGATAAGTGTTTTTGGCTAATGGAACAGCTGGAGTGATGTCATGCAGTGAGAGACCGATGCATGGACAAGGACACAGACACTTTGTTTCACGAAAGTTAACATTTTCTGCGTTACCTACAATGCTGTTTGACGCCCTGCTGAGAGTGGTGCTAGTGGGATCTTGCCATCACTTCATCTCTGCCtgaagagagcgatgcagcagtgctGAAGTCTTTTAGTTTGTCCAGGTCTCTTGCCTCCTCATCTATACACTGTACTCAACAAATCAAGTTCCAAAACGTCAATTAGCAACAGAATCACTAagcttaaataaaaacatattttttaaatataagggtggagttttcctttaaggttTATAATCCATTAACTACATGGAAAACACTGGAACAAGGATTAATCTAATATTATGTTAAAGATTAATGAGGGGATATCTGGAACCATCCATGGTTCCTTGGAGTTAAAGAGGTCAATTCATTTACATAGCAGAAACTGGGGGTGAAAGGCAACATATTTTCTCAAAAAGATGTTAATTTTTGCTCTACTAATTAGATCTTTCCACCTCCATTTCAGAAAGCTGGACATCAAATGCTATTGTATCTGCTGTATTTATTATCAACTTGTATGATACTTTGATCTTAGCACTACTGTGTAAATGGGACCCTGTCTTAATACACATGTTTATGGTGTCACTGTAGAATAAAAGACTTAATTTTCCTgtagtttattttaattgaatatgGAAATGGGCAATTTCATTTTCAATGCATTGCATGAAGTGTGGCTTGGCACATA

Function

GO: NA

KEGG:

id description
ko04146 Peroxisome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580336.1 lncRNA upstream 49892 12559513 ~ 12572407 (+) True LOC117599989
TU377521 lncRNA upstream 550112 12063884 ~ 12072187 (+) True G318725
TU377493 lncRNA upstream 596856 12025208 ~ 12025443 (+) True G318697
TU377478 lncRNA upstream 751333 11870767 ~ 11870966 (+) True G318683
XR_004580299.1 lncRNA upstream 775888 11833308 ~ 11846411 (+) True LOC117599957
TU377905 lncRNA downstream 1921 12627675 ~ 12627890 (+) True G319087
XR_004580307.1 lncRNA downstream 136082 12761836 ~ 12763727 (+) True LOC117599962
XR_004580306.1 lncRNA downstream 136082 12761836 ~ 12763727 (+) False LOC117599962
TU378003 lncRNA downstream 139301 12765055 ~ 12803019 (+) True G319170
TU378001 lncRNA downstream 147344 12773098 ~ 12779233 (+) False G319170
XM_034297705.1 mRNA upstream 193768 12416510 ~ 12428531 (+) True LOC113533522
XM_026925818.2 mRNA upstream 999454 11596699 ~ 11622845 (+) False pax3a
XM_026925819.2 mRNA upstream 999454 11596700 ~ 11622845 (+) True pax3a
XM_026925817.2 mRNA upstream 999454 11596700 ~ 11622845 (+) False pax3a
XM_026925732.2 mRNA upstream 1077574 11535133 ~ 11544725 (+) True snorc
XM_034314599.1 mRNA downstream 156783 12782537 ~ 12796824 (+) False LOC113533470
XM_034314598.1 mRNA downstream 166381 12792135 ~ 12796824 (+) True LOC113533470
XM_026924981.2 mRNA downstream 342560 12968314 ~ 12982849 (+) True LOC113533117
XM_026925860.2 mRNA downstream 379040 13004794 ~ 13014554 (+) True abhd17aa
XM_026925861.2 mRNA downstream 380025 13005779 ~ 13014554 (+) False abhd17aa
trnag-ccc_6 other upstream 1049402 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 1073111 11549115 ~ 11549188 (+) True trnai-aau_17
trnap-agg_14 other upstream 1074120 11548108 ~ 11548179 (+) True trnap-agg_14
TU377149 other upstream 1152800 11467299 ~ 11469499 (+) True G318439
XR_004580315.1 other upstream 1161231 11399884 ~ 11461068 (+) False per2
TU378000 other downstream 139301 12765055 ~ 12772867 (+) False G319170
XR_004580321.1 other downstream 1211679 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other downstream 1211679 13837433 ~ 13895665 (+) False LOC113533270
TU379509 other downstream 2201511 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 3243262 15869016 ~ 15870995 (+) True G321088

Expression Profile