RNA id: XR_004580347.1


Basic Information

Item Value
RNA id XR_004580347.1
length 653
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id LOC117599995
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11629570 ~ 11631921 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGATCAGCTGCCCCCCGCCGCGCCACCGTCAACCAGTGAACTCCACCGCGCTTGATTTGATACGTCTATGAAAGGAGATACCGCTACCTTGGGACGGGACGGGGGGAGTTGTCGAacaaaataatctaaaaaagaagaagaagaagaagaagaagaagaagaagaaccaaACTGTCAAACATAGATTCCTCTGAAAAGGGAAGCACCCAAGACTGAATATAgacaaatattttacttttcaatGTTTCGTGTATTAATGAGATTCAgcaaaaaaattgtgatttttactTTATATGAGATTTCTTAAATTATCATGTcacaaaataaagtttaattttggTAAGAACAAATGTTACTTCATCATGCATTACATGATTTACAAGTTGGTAAACATTAgagctaaaataacaatgtcTGCATATGTGACTAATACACATGAATTTTGTCCTCAATCCTACATCGTCATTGTTTCCTTTAAAGACGAGGACTCCTTAGGAAAAGCTTCATCGAAACTGGACAGATCTACAGTGAGGTCATTCCTGAGAAAGTGGGGTTGTTGTCATACAAAACCCCTCATTCAGTAAAGACGGATGCCACATCATGTGAAGTATTTGTGCTAaaagtttttattgtttgtaaTATTGGTCTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403404.2 lncRNA downstream 218406 11394881 ~ 11411164 (-) True LOC113533221
XR_004580316.1 lncRNA downstream 218409 11404548 ~ 11411161 (-) False LOC113533221
TU377282 lncRNA downstream 219338 11405374 ~ 11410232 (-) False LOC113533221
TU377280 lncRNA downstream 228068 11400665 ~ 11401502 (-) True G318552
TU377193 lncRNA downstream 442170 11187197 ~ 11187400 (-) True G318479
TU377432 lncRNA upstream 57568 11689489 ~ 11693334 (-) True G318639
TU377454 lncRNA upstream 169726 11801647 ~ 11801862 (-) True G318660
TU377875 lncRNA upstream 951944 12583865 ~ 12584089 (-) True G319059
TU377987 lncRNA upstream 1001972 12633893 ~ 12648886 (-) True G319163
TU378012 lncRNA upstream 1122847 12754768 ~ 12779226 (-) True G319178
XM_026925340.2 mRNA downstream 57180 11549783 ~ 11572390 (-) True acsl3b
XM_026925725.2 mRNA downstream 133179 11492594 ~ 11496391 (-) True LOC113533529
XM_026925675.2 mRNA downstream 160783 11467120 ~ 11468787 (-) False hes6
XM_026925674.2 mRNA downstream 160783 11467120 ~ 11468787 (-) True hes6
XM_034314679.1 mRNA downstream 323469 11287176 ~ 11306101 (-) False gbp2
XM_034297713.1 mRNA upstream 52914 11684835 ~ 11705835 (-) False wu:fb63a08
XM_034297716.1 mRNA upstream 52914 11684835 ~ 11705835 (-) False wu:fb63a08
XM_026925718.2 mRNA upstream 52914 11684835 ~ 11705835 (-) False wu:fb63a08
XM_034297715.1 mRNA upstream 52914 11684835 ~ 11705835 (-) False wu:fb63a08
XM_034297714.1 mRNA upstream 52914 11684835 ~ 11705835 (-) False wu:fb63a08
trnaw-cca_17 other downstream 81131 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 1101320 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 2656358 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 2675460 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 2743861 8883649 ~ 8885709 (-) True G317176
TU379789 other upstream 3099991 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 3595551 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 4055337 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 4055337 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 4725653 16357574 ~ 16367004 (-) True G321462

Expression Profile