RNA id: trnae-cuc_41


Basic Information

Item Value
RNA id trnae-cuc_41
length 72
RNA type tRNA
GC content 0.65
exon number 1
gene id trnae-cuc_41
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2494232 ~ 2494303 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCCTGGAGgtctagtggttaggccttggcgctctcaccgccacggcccgggttcgattcctggccagggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370833 lncRNA upstream 370798 2116324 ~ 2123434 (+) True G313052
TU370836 lncRNA upstream 517517 1974099 ~ 1976715 (+) True G313053
TU370796 lncRNA upstream 599285 1894702 ~ 1894947 (+) True G313016
TU370724 lncRNA upstream 853506 1624563 ~ 1640726 (+) True LOC113543035
TU370723 lncRNA upstream 857509 1624563 ~ 1636723 (+) False LOC113543035
TU371292 lncRNA downstream 180130 2674433 ~ 2674646 (+) True G313443
XR_004580285.1 lncRNA downstream 236912 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA downstream 240816 2735119 ~ 2735384 (+) True G313465
TU371354 lncRNA downstream 294939 2789242 ~ 2789496 (+) True G313494
XR_003404407.2 lncRNA downstream 448184 2942487 ~ 2945207 (+) True LOC113543325
XM_026941358.2 mRNA upstream 168752 2319874 ~ 2325480 (+) True dsela
XM_026941102.2 mRNA upstream 175365 2298126 ~ 2318867 (+) False tmx3a
XM_034314711.1 mRNA upstream 175365 2298138 ~ 2318867 (+) False tmx3a
XM_026941100.2 mRNA upstream 175365 2305769 ~ 2318867 (+) True tmx3a
XM_026940816.2 mRNA upstream 219286 2268447 ~ 2274946 (+) True toe1
XM_034297694.1 mRNA downstream 151228 2645531 ~ 2655148 (+) True si:dkey-181m9.8
XM_034314885.1 mRNA downstream 160897 2655200 ~ 2661421 (+) False LOC117599997
XM_026940928.2 mRNA downstream 220136 2714439 ~ 2717698 (+) True c21h7orf25
XM_026941137.2 mRNA downstream 224456 2718759 ~ 2728068 (+) True ralab
XM_026941136.2 mRNA downstream 224456 2718759 ~ 2728068 (+) False ralab
TU370902 other upstream 308555 2181979 ~ 2185677 (+) True G313112
XR_003404395.2 other upstream 350919 2133214 ~ 2143313 (+) False tgs1
XR_003404390.2 other upstream 516923 1965740 ~ 1977309 (+) True c21h5orf22
TU370328 other upstream 1358212 1131883 ~ 1136020 (+) False paxip1
TU370320 other upstream 1362549 1128925 ~ 1131683 (+) False paxip1
XR_004580350.1 other downstream 160897 2655200 ~ 2662399 (+) True LOC117599997
XR_004580351.1 other downstream 160897 2655200 ~ 2662399 (+) False LOC117599997
XR_004580352.1 other downstream 160897 2655200 ~ 2661421 (+) False LOC117599997
XR_004580353.1 other downstream 160897 2655200 ~ 2660562 (+) False LOC117599997
TU371295 other downstream 180978 2675281 ~ 2675848 (+) True G313445