RNA id: trnas-aga_13


Basic Information

Item Value
RNA id trnas-aga_13
length 82
RNA type tRNA
GC content 0.59
exon number 1
gene id trnas-aga_13
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3625416 ~ 3625497 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAGTCGTGGCCGAGTGGTTAAGGCGATGGACTAGAAATCCATTGGGGTCTCCCCGCGCAGGTTCGAATCCTGCCGACTACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU371775 lncRNA upstream 100898 3524309 ~ 3524518 (+) True G313853
TU371743 lncRNA upstream 136117 3481100 ~ 3489299 (+) False LOC113543208
TU371707 lncRNA upstream 326110 3299098 ~ 3299306 (+) True G313796
TU371493 lncRNA upstream 549046 3076049 ~ 3076370 (+) True G313607
XR_003404407.2 lncRNA upstream 680209 2942487 ~ 2945207 (+) True LOC113543325
TU371896 lncRNA downstream 147573 3773070 ~ 3819909 (+) True G313949
TU371923 lncRNA downstream 181651 3807148 ~ 3808690 (+) True G313975
TU371944 lncRNA downstream 220360 3845857 ~ 3846095 (+) True G313990
XR_004580328.1 lncRNA downstream 262530 3888027 ~ 3895685 (+) True LOC117599982
TU372207 lncRNA downstream 371005 3996502 ~ 4000314 (+) True G314222
XM_026941367.2 mRNA upstream 102203 3502067 ~ 3523213 (+) True atg5
XM_026941285.2 mRNA upstream 136049 3423567 ~ 3489367 (+) False LOC113543208
XM_026941286.2 mRNA upstream 136049 3426805 ~ 3489367 (+) True LOC113543208
XM_026941397.2 mRNA upstream 307465 3298344 ~ 3317951 (+) True sall3a
XM_026941475.2 mRNA upstream 542665 3080016 ~ 3082751 (+) True nrn1b
XM_034314852.1 mRNA downstream 16818 3642315 ~ 3646672 (+) True LOC113543357
XM_026941244.2 mRNA downstream 22250 3647747 ~ 3662687 (+) True nt5c3a
XM_026941245.2 mRNA downstream 30537 3656034 ~ 3662687 (+) False nt5c3a
XM_026941277.2 mRNA downstream 187756 3813253 ~ 3816854 (+) True pmvk
XM_026940992.2 mRNA downstream 337258 3962755 ~ 3968351 (+) False tagln
trnat-agu_12 other upstream 736028 2889315 ~ 2889388 (+) True trnat-agu_12
TU371295 other upstream 949568 2675281 ~ 2675848 (+) True G313445
TU371294 other upstream 949568 2675322 ~ 2675848 (+) False G313445
XR_004580351.1 other upstream 963017 2655200 ~ 2662399 (+) False LOC117599997
trnas-aga_14 other downstream 463 3625960 ~ 3626030 (+) True trnas-aga_14
trnas-aga_16 other downstream 2535 3628032 ~ 3628113 (+) True trnas-aga_16
trnap-ugg_21 other downstream 321438 3946935 ~ 3947006 (+) True trnap-ugg_21
XR_004580320.1 other downstream 966943 4592440 ~ 4692816 (+) False LOC113543063
TU372694 other downstream 1311551 4937048 ~ 4958120 (+) False LOC113543089