RNA id: TU383856


Basic Information

Item Value
RNA id TU383856
length 385
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G324026
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 57345 ~ 58552 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCGGAAGCTTTCTGATAAAGTTCTCCGcagtttcttcattttgttcagGGTTTGTTGCTTTTTTCTGAAGCTGCCGCTACATCACACATGtccgcgcgcgcacacacacacacacgcgcacgaacacacacgcacacacattcatgcattaCACTGCAGTCTGAAGAGACATGGTTAATCAGATTCTTTGATTATGGTgaagaaaagtgaaagagaaTCAGTTGGATGGCATTCCCGTCTCATTCCCGTCTCATTCCCGTCTCACTCCGTCTCACTCCCGTCTCACTCATTCTCAAACTTGCTGTACGGGTGATCAGAGTCTGACATCAAACCTGCatagacacgcacacacacgtgcacacacgcacacacacatgcacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383884 lncRNA downstream 33400 91952 ~ 92848 (+) True G324041
TU383885 lncRNA downstream 57862 116414 ~ 120887 (+) True G324042
TU383880 lncRNA downstream 58415 116967 ~ 150990 (+) True G324039
TU383888 lncRNA downstream 78549 137101 ~ 138861 (+) True G324045
TU383892 lncRNA downstream 123954 182506 ~ 193845 (+) False cmc1
XM_034298201.1 mRNA upstream 21573 25299 ~ 35772 (+) True nod1
XM_026912126.2 mRNA upstream 21573 25299 ~ 35772 (+) False nod1
XM_026912127.2 mRNA upstream 21573 26097 ~ 35772 (+) False nod1
XM_026912124.2 mRNA upstream 42773 5556 ~ 14572 (+) True ggctb
XM_026912125.2 mRNA downstream 5025 63577 ~ 67999 (+) True LOC113525566
XM_034298002.1 mRNA downstream 18646 77198 ~ 95728 (+) False xrcc1
XM_034297999.1 mRNA downstream 18647 77199 ~ 95728 (+) True xrcc1
XM_034298001.1 mRNA downstream 18647 77199 ~ 95728 (+) False xrcc1
XM_034298000.1 mRNA downstream 18647 77199 ~ 95728 (+) False xrcc1
XR_003402678.2 other upstream 23556 25296 ~ 33789 (+) False nod1
TU383850 other upstream 34135 22297 ~ 23210 (+) True G324020
TU383916 other downstream 182645 241197 ~ 292588 (+) True G324068
TU383926 other downstream 247629 306181 ~ 311233 (+) False tbx20
TU383913 other downstream 256798 315350 ~ 321774 (+) False tbx20
TU383914 other downstream 296229 354781 ~ 412109 (+) True G324067
TU383942 other downstream 379839 438391 ~ 442287 (+) True G324085

Expression Profile