RNA id: TU383893


Basic Information

Item Value
RNA id TU383893
length 3045
lncRNA type sense_over
GC content 0.43
exon number 5
gene id cmc1
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 182467 ~ 193845 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGGGATCAGCGCGTGTTTGCAGGGTGACATTGAGCGTGAAGTCGCCATGTGTGAGCTATAATGCGTTACAGTGAGCAGTGTGTAGCTGTGAGATAATTAATTCACTCATGGAGACTTCAAACCCAgatGAGCCCCACCTCAGACACGTGGAGCGCGACGTCCTGATCCCGAAAATGATGAGAGAGAAAGCTAAAGAGCTCTGCGCCGAACACGTCGAAGtgcacttcAGAGGGGACGTCTGTAGGGAACCTCACAGCGAGTGCTCAGAGCCGTGCTGATGTTCTGGAGCGACGGAGAACCGCTGGGAGAACCCTCACTGtgttgaatgaaaatgaaagTTAATGAGTTCTGTGAGGGAATAAAAGATACGTAAGAGGGGTGAAAATGTACACAatcagtgaaagaaagaaaaaaagaaagaaagaaagttgaGGGAAAAGAACaaagggaaagaaaataaacaatgaaaaagaaaaatgaagaaataaagaaacaatggttataaaaagataaaactaaGGATGaaggaacattaaatgtagctataaatggataaaaagtatgatgtgtgattctttaggaaacaaaaacactacCATtgttggtataagaggaataactcCCTGAGGGTCGTgtttttataggaaaatcatgGTCAgtgtgctaacagtaactccgcttcatcacagcaccccgctgttgattattttcctttaacagcacgaCACACAGAGTGTTATTCCTGCGTATGGAGGAGTTAGTCTGGAGTACTGTACTTTAGAAAGCGCTTGTTcagctgtgcgtgtgtgcgtgcgtgtgtgtgtgtgcgtgtgcgtgtgtgtgcgtgtgcgtttgtgtgtgctgtttacAGACGAGCCCGTTAGCTCTCTGGAGATTCGGGTCTCGGGCTCGTCGCTGCGCTGAATTATGCGTCGAGCTTCTTTAATCCGAAAATCACATCTgcactgattgattgatttctCGTCCGCTGGAGAGACGCGATGGAGTCGAATTTCTGCTTTGTTTCTAATCAGGTGAGAATTAATTGAGTTTGGAGCGAAATCCCTGCTGCACCGCCGCCGCTCGGCCGACCGGAAGAAAGAGATTGAAACGGGAAAATAGCACAACaaaggattgtgggtaatgtgaGCGCGGAGGGGGAAACGCTAAACCTGTGCTAAACGCTAAACTTCTCAGaaaatcctctctctctcagacacggcgagattttatttttattatttcactgtAAACATGTTCGTCAGTCAGCGCtctgaacaacacacacacacacacacacacacacgctgtaaaTATCACCACATGTCGTTTAACTGATTCTCAGCACACACCTACTTCACACTCAGTGAGTTCATTAATCTGctgttcagtgtttattaaGCTACACTTCATTATTTATGCTAATTCTGCATCTTAAAGTCCTGATAATAAACACATGTACATATTCAATTATCACAAACCTGCATTTACAGACAGATTACTGAGTGACTTTCATCTTTAAGTAAACATTTTTCtagttaacattaaaaataaaagataaatagtGCAAAATGAACAAGCGTAAAATTaagacatcataaaaaaaaattcaatataaaGTTAATCAggtgttataaaataaaacatttcttccATGAAGCCACTTTTACAATTAACGAATAACATATAAATCATTTAgataaaatatatgcaaatttaagtatgaatacaaaaaaatgcaagaaatacaaagtcacatgacctctaATTGCAGGATTAattaaattcagattaatattgATTAATTCAGATTAATACTGTTTAAAGTACATCTgaagtgtaaacaataaaatgctaaaaaacaGTAAATTTTCCCTCGTTGCATCTGGAACTTTCTGTCTTCTACAGACGAGCTGGTGCTGTGAAACTGCTTTCTGCAAGTGTAAACCGTTAGAAACGTTAGAACAGCAGAAACGGGTGAAACGCGCAGTGTGTGAATCTGAGTGTAAACACGTTCACTGTGTTAGTCTTTAATAAACACGTCTCTGTGACTGAGACTCGCAGTAAACACAGCACTCAGTACACATAAAAACTGAAGCTGTGTGAGTCAGTGAGGGACACGACTGTGGAGTTAAACACGTTACACTGAAGTGTTTCCATACGAGAGCCGCTCACACCGCTGAGTCCAGACGCGTGAAACACCTTCAGAAACACCTTCAGTCAGAATTCACTCGGGTTATAATTCATCACACGACGTCTCTTTCCTGAACACTTTACAGAACAGCGTTAATACCCGTGTTCTCTTCTCTTTATTACTCTTTATTACTCCTACAGTGAGACACGGAACTCGCGCTGTCCCGGCCGTTCCTCACTGTCTGATACAGTACATTCTGGTGTGTTTCATGTAACAGCGCCTCCTAGAGGACACACTCATGTTACATGCAAGTATGAATATATCACCACGTGTGAACGTCCACACACACGCGGAGACAGCAGTATAAATAAGCCCTAAGAGTGTACTTTTAAAGAATAAAGTTGTAATCGCAGTGATggggtgtgtgcgtgcgtgcgtgcgtgtgtgtgtgtttgtgtgtttgtgtttgtgtgtccgggtttgtgtgtgtgtttgtgtgtcagggtttgtgtgtgtgtttgtgtgcacgcATGCGCACTTGTGTGGTATTAGTGTCagggtgtgtgcgtgtatgtattAGATTAACGTGTGTGCGCATAAGTGTATtagattagtgtgtgtgtgtgcgtatgtattagattagtgtgtgtgtgtgtgtgtgtgtatgtattagaTTAGTGTCGGTGTGTGGGTGCTGGAATTGCTTTTGCTGGGTGTCATGTGCATGCAGATGAAAGACGACGCTGTGATTCGGTCGTACAGGAATAATCAGTGTGCAGTGACGGAGCGTTAATTAGCGCAGGACCTCGTTAACCGTCTCACTTAACCCCGCCGTAGTGCGCCACTTAACCCCGCCCGTAGTGCGCCACTTAACCCCGCCGTAGTGCGCCACTTAACCCCGCCCTAGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383880 lncRNA upstream 31516 116967 ~ 150990 (+) True G324039
TU383888 lncRNA upstream 43645 137101 ~ 138861 (+) True G324045
TU383885 lncRNA upstream 61619 116414 ~ 120887 (+) True G324042
TU383884 lncRNA upstream 89658 91952 ~ 92848 (+) True G324041
TU383856 lncRNA upstream 123954 57345 ~ 58552 (+) True G324026
TU383904 lncRNA downstream 28400 218832 ~ 219099 (+) True G324060
XR_003402450.2 lncRNA downstream 43182 233614 ~ 234579 (+) False LOC113523709
TU383905 lncRNA downstream 43227 233659 ~ 234831 (+) True LOC113523709
TU383912 lncRNA downstream 49938 240370 ~ 327939 (+) False tbx20
TU383927 lncRNA downstream 111441 301873 ~ 303209 (+) False tbx20
XM_026912119.2 mRNA upstream 67360 108218 ~ 115146 (+) True ethe1
XM_026912112.2 mRNA upstream 74708 98037 ~ 107798 (+) False LOC113525556
XM_026912116.2 mRNA upstream 74708 98037 ~ 107798 (+) False LOC113525556
XM_026912114.2 mRNA upstream 74709 96799 ~ 107797 (+) True LOC113525556
XM_034297886.1 mRNA downstream 32085 222517 ~ 231494 (+) True zgc:114181
XM_034298133.1 mRNA downstream 111448 301880 ~ 321183 (+) True tbx20
XM_034298255.1 mRNA downstream 143252 333684 ~ 350549 (+) True dpy19l1l
XM_034297869.1 mRNA downstream 265084 455516 ~ 456979 (+) True LOC117595771
XM_034297870.1 mRNA downstream 265144 455576 ~ 456979 (+) False LOC117595771
XR_003402678.2 other upstream 148717 25296 ~ 33789 (+) False nod1
TU383850 other upstream 159296 22297 ~ 23210 (+) True G324020
TU383916 other downstream 50765 241197 ~ 292588 (+) True G324068
TU383926 other downstream 115749 306181 ~ 311233 (+) False tbx20
TU383913 other downstream 124918 315350 ~ 321774 (+) False tbx20
TU383914 other downstream 164349 354781 ~ 412109 (+) True G324067
TU383942 other downstream 247959 438391 ~ 442287 (+) True G324085

Expression Profile