RNA id: TU383916


Basic Information

Item Value
RNA id TU383916
length 815
RNA type TUCP
GC content 0.55
exon number 5
gene id G324068
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 241197 ~ 292588 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gAGCTCACTGAGAGTGTAACGgtggtgtgtgaagtgtgatcACAGCTCAGCATCAGGAAGATCAGGCGGATGAAGCACGGCTCACAATCACActgaaggaggtgaaggaggtgatggaggtgatggaggtgatggaggtgaAGGAGTCCTGCTACGATGGTGTTGACAATTTCTTGGATTGTCATATTTGCAGACAGTTAGCGTCTCCTCGAGATGCAGCTGAGGGGAAAGTGATAAGAGCAGGAAGTGGCATCCTGTCAGAGCCTGAGGAGGATGATGGACTTCCTCCTGCGTATCTCTGAGCGTTTCTCGGTCACAGAGTTAACAAGATCAGAGCTGACGTTCTGCAGCGCTGCGGCGTTACGGCCTGATAACACCAGCGTCGGGGCAGGAAACAGCGTGCTGCGTGTCGCAATGATCTGGGAGAACAGCCTGGAgTGTTATTGGGACGTGAGGGTCTGGTACAGAGACGCTGATCCGCTCCCCTCCCGCTCGGAGCCGCTGGAGGTGATAAGGACAGAGACACGGCTATCTGAGCTCACAGAGTCTCAGGACGTCTCACTGCGGCCCGGCacacggacagacagacaggcggagagagagacagagagacagacagacaggcggagagagagacagagagacagacggacaggcagacagacagagcgacagagagacagagagacagacagacagacagagagacaggtggagagagagacagacagacagagggacagacagagagagagacagacagacagagggacagacagagagagagagacagacagacagacagacagacagag

Function

GO: NA

KEGG:

id description
ko04020 Calcium signaling pathway
ko04724 Glutamatergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383905 lncRNA upstream 6366 233659 ~ 234831 (+) True LOC113523709
XR_003402450.2 lncRNA upstream 6618 233614 ~ 234579 (+) False LOC113523709
TU383904 lncRNA upstream 22098 218832 ~ 219099 (+) True G324060
TU383892 lncRNA upstream 47352 182506 ~ 193845 (+) False cmc1
TU383893 lncRNA upstream 50765 182506 ~ 190432 (+) True cmc1
TU383927 lncRNA downstream 9285 301873 ~ 303209 (+) False tbx20
TU383910 lncRNA downstream 33943 326531 ~ 355303 (+) True G324064
TU383931 lncRNA downstream 39335 331923 ~ 332801 (+) True G324082
TU383950 lncRNA downstream 66535 359123 ~ 361065 (+) True G324089
TU383939 lncRNA downstream 72900 365488 ~ 437810 (+) False G324083
XM_034297886.1 mRNA upstream 9703 222517 ~ 231494 (+) True zgc:114181
XM_026909662.2 mRNA upstream 47571 182467 ~ 193626 (+) False cmc1
XM_026912119.2 mRNA upstream 126051 108218 ~ 115146 (+) True ethe1
XM_026912112.2 mRNA upstream 133399 98037 ~ 107798 (+) False LOC113525556
XM_026912116.2 mRNA upstream 133399 98037 ~ 107798 (+) False LOC113525556
XM_034298133.1 mRNA downstream 9292 301880 ~ 321183 (+) True tbx20
XM_034298255.1 mRNA downstream 41096 333684 ~ 350549 (+) True dpy19l1l
XM_034297869.1 mRNA downstream 162928 455516 ~ 456979 (+) True LOC117595771
XM_034297870.1 mRNA downstream 162988 455576 ~ 456979 (+) False LOC117595771
XM_034297821.1 mRNA downstream 167625 460213 ~ 466623 (+) True LOC113524801
XR_003402678.2 other upstream 207408 25296 ~ 33789 (+) False nod1
TU383850 other upstream 217987 22297 ~ 23210 (+) True G324020
TU383926 other downstream 13593 306181 ~ 311233 (+) False tbx20
TU383913 other downstream 22762 315350 ~ 321774 (+) False tbx20
TU383914 other downstream 62193 354781 ~ 412109 (+) True G324067
TU383942 other downstream 145803 438391 ~ 442287 (+) True G324085
TU383992 other downstream 162322 454910 ~ 466625 (+) True G324120

Expression Profile