RNA id: TU383937


Basic Information

Item Value
RNA id TU383937
length 1718
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G324083
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 365488 ~ 437810 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCGGGGAAGCggtgagcaggtgtgtgttctCAGACAGGAAGATAAAGTACAGACGTGTGCGTAGAAAAAGGGCCACAGCAGTTTATTTCAGGGTTTCAGTACCTCTTACACTTTAAAAAGCTCAATGTGCCAGGAACAGACGCGTCTACACAAAGTTTATTCTCTTAaaaatacatcatcatcatcatcatcaagctTAAACTCATACATTGCCATgaagcagagacacacagagagagagagagagagagacacacacagctcctgTCTAACAGAACAGTACAGTGTGGAAGCTCTACAcaagtgtgtaacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtaacgTGGGAAACGTGATCACCTGAGGAAAAGGAGGATAAAAATCAACCTCCACACAGCAGTAACGCAGCAGTCACacgggcagagagagagagagagagagagagagaattaagaTAAAGGAGAGCGCAAAAAAAAGGAACTACAGATGACAGCGATAAAGAGAAACTGagggaaaaacaaataaagagattagagggagaaatagagagagagagagagaaagagagagagagagagagagagagagagagagagagaggggagaggtaGTAGAGACAGAGGTAGCGTAGCAGAACTATATTAGGAGCTCAGGAGCTTTaaaggccacacacacacacacacacacacacacacacacacacacacacacacacacacaaacctctaTTACAGCTTGTAGagaagaaagtgtgtgttacattaaTTTCTATTGTGTTACAAGCCAAGAGCTtcatgaaacacaaacacacacacacacacacggtccaGCAGAGAGGTAGATTCTAAGAGATAAGGAAGAAAGGAAGCTCGACTtgactgccacacacacacacacacacacacacacacacagcaggggcAGAAGCTGTTTACCAGCTCCGAGTTAACAGTGTTAAGTGTGTATCAGTAGCGcaaggtctgtgtgtgtgtgtgtgtgtgtgtgtcacacacacacacacacacacacacacaccactcacattATTGCCCCACACAGGCAAataaaataagagagagagcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgacagtAAAGGTGTGAGAGCAGATCTATATCAGGAGCTGCGTTAAAGAAGAAACACATacgagtgtgtgtctgtgtgggtttctgtgtgtgtgttagttttcaGGGGGGCGGACAGGAAGTGAGGTCGCTGGAGCCGGCGGTATCCCATCAGGCtgtgcagaagaagaagaaggaggaggaggaggggggccAGGGTCTGTAAGGGTGAAATAAATGATTGTTAGGATCCTGAAATTCAtgtttacacacattattacatcacttcctgtgatGTCTAATTGGTCGACATTATCCTCTgctgcattaattataaataaacctgcactactgtcagagctgctgttatagaaaatgaatcaacaccttctgaccaatcagagtgcaggattcagaggcgctgtggtgtaaagggTAATAAACACTCACACATGCCGTTCGGGGCTCCGGGGTGTCTGGGGCCCATCAGAGGGGGCATCGCGCCTGGCGGAGCTCCGGGCATCGCACCAGGGGGGGCACCGGGCATCATACGGCCTGGCATGGGCTGCCCCGGTCCAACCATCGgccctgtacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383950 lncRNA upstream 74984 359123 ~ 361065 (+) True G324089
TU383910 lncRNA upstream 80746 326531 ~ 355303 (+) True G324064
TU383931 lncRNA upstream 103248 331923 ~ 332801 (+) True G324082
TU383912 lncRNA upstream 108110 240370 ~ 327939 (+) False tbx20
TU383986 lncRNA downstream 6967 444777 ~ 446125 (+) True G324116
TU384039 lncRNA downstream 106058 543868 ~ 548283 (+) True G324139
TU384040 lncRNA downstream 106058 543868 ~ 548283 (+) False G324139
TU384041 lncRNA downstream 106856 544666 ~ 548283 (+) False G324139
TU384043 lncRNA downstream 114913 552723 ~ 557118 (+) True G324140
XM_034298255.1 mRNA upstream 85500 333684 ~ 350549 (+) True dpy19l1l
XM_034298133.1 mRNA upstream 114866 301880 ~ 321183 (+) True tbx20
XM_034297886.1 mRNA upstream 204555 222517 ~ 231494 (+) True zgc:114181
XM_026909662.2 mRNA upstream 242423 182467 ~ 193626 (+) False cmc1
XM_026912119.2 mRNA upstream 320903 108218 ~ 115146 (+) True ethe1
XM_034297869.1 mRNA downstream 17706 455516 ~ 456979 (+) True LOC117595771
XM_034297870.1 mRNA downstream 17766 455576 ~ 456979 (+) False LOC117595771
XM_034297821.1 mRNA downstream 22403 460213 ~ 466623 (+) True LOC113524801
XM_034298297.1 mRNA downstream 32146 469956 ~ 483298 (+) True ppox
XM_034298298.1 mRNA downstream 32165 469975 ~ 483298 (+) False ppox
TU383914 other upstream 23940 354781 ~ 412109 (+) True G324067
TU383913 other upstream 114275 315350 ~ 321774 (+) False tbx20
TU383926 other upstream 124816 306181 ~ 311233 (+) False tbx20
TU383916 other upstream 143461 241197 ~ 292588 (+) True G324068
XR_003402678.2 other upstream 402260 25296 ~ 33789 (+) False nod1
TU383942 other downstream 581 438391 ~ 442287 (+) True G324085
TU383992 other downstream 17100 454910 ~ 466625 (+) True G324120
TU383993 other downstream 17100 454910 ~ 466625 (+) False G324120
TU384046 other downstream 119605 557415 ~ 558139 (+) True G324143
TU384003 other downstream 168276 606086 ~ 606914 (+) False G324123

Expression Profile