RNA id: TU384011



Basic Information


Item Value
RNA id TU384011
length 734
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G324123
representative False

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 567202 ~ 635045 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


ctaAAGGtgtttgaaattatttaattaaaaaaaaaaaaaccaaacatcaGTCTGTACAGTCACATGACCAACAGAaatctacatttttctttttccccctagACATAATTTTGGATATCAAAGAAAGCAGAAAGATGCTGAAAAGCAAATCGTTcacaaaaagtaaaacaaacttttcatggtttaatatactataatacacaGTAAGAACTTCCTGATCGAGTCACGCCGCTGATTACGCTAACGATTAGCACAGAGAGAGCCGAGTTACTGAAACAGCACAGgataataaaacactgatgtaCTGTGGAAGTTCTTCACCTCCAGcgatctcacacactcacacacactcacacacactcacacacactcacacacactcacacacactcacacactcacacggcTGGAGAAAGCAGAAAGCAGTGTGTTTCAGTCGGTGGTCAAAGCTGGAGGATCAGCGGGAACAGAAAAACGTCCAAACGCAAATTTACACCGCTGCGTCTTCATTTCTTCTGTTTAGGAGGCGGCctgaagagaaaacacacacgaGGGTTAGCTTCAGGGggtaaaaaacacaaaataaagtgtttaaatataataaaatatacgtTTAACTTCACCAGaggcacctttttttttgacGGTCAGATAGAATTACAGATAGCAAAGTTTGAAAAACTGACAAGTTCAAGTGACATGTTATctggggtgcacaaacttttgcactcaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU384059 lncRNA upstream 6916 598410 ~ 599170 (+) True G324156
TU384008 lncRNA upstream 14488 567202 ~ 591598 (+) True G324123
TU384020 lncRNA upstream 17177 585179 ~ 588909 (+) True G324125
TU384054 lncRNA upstream 30948 573006 ~ 575138 (+) True G324151
TU384043 lncRNA upstream 48968 552723 ~ 557118 (+) True G324140
TU384063 lncRNA downstream 131 607045 ~ 607543 (+) True G324160
TU384065 lncRNA downstream 698 607612 ~ 608702 (+) True G324161
TU384105 lncRNA downstream 106481 713395 ~ 713801 (+) True G324197
TU384127 lncRNA downstream 142537 749451 ~ 753443 (+) True G324216
TU384129 lncRNA downstream 142537 749451 ~ 753443 (+) False G324216
XM_026911132.2 mRNA upstream 81929 505314 ~ 524157 (+) True zgc:162160
XM_034298297.1 mRNA upstream 122788 469956 ~ 483298 (+) True ppox
XM_034298298.1 mRNA upstream 122788 469975 ~ 483298 (+) False ppox
XM_034297821.1 mRNA upstream 139463 460213 ~ 466623 (+) True LOC113524801
XM_034297870.1 mRNA upstream 149107 455576 ~ 456979 (+) False LOC117595771
XM_026911136.2 mRNA downstream 44004 650918 ~ 657392 (+) True etsrp
XM_026911162.2 mRNA downstream 51567 658481 ~ 663976 (+) True pycard
XM_026911161.2 mRNA downstream 51567 658481 ~ 663976 (+) False pycard
XM_026911138.2 mRNA downstream 67954 674868 ~ 680370 (+) True LOC113524791
XM_034297823.1 mRNA downstream 112475 719389 ~ 745520 (+) True gramd1a
TU384046 other upstream 47947 557415 ~ 558139 (+) True G324143
TU383992 other upstream 139461 454910 ~ 466625 (+) True G324120
TU383993 other upstream 139461 454910 ~ 466625 (+) False G324120
TU383942 other upstream 163799 438391 ~ 442287 (+) True G324085
TU383914 other upstream 193977 354781 ~ 412109 (+) True G324067
TU384064 other downstream 698 607612 ~ 610009 (+) False G324161
TU384116 other downstream 138759 745673 ~ 748475 (+) True G324206
XR_004576966.1 other downstream 167375 774289 ~ 806528 (+) True psmc4
XR_004576993.1 other downstream 350211 957125 ~ 1010223 (+) False cpne4a
TU384187 other downstream 511354 1118268 ~ 1163614 (+) True G324258

Expression Profile