RNA id: TU384020


Basic Information

Item Value
RNA id TU384020
length 3583
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G324125
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 585179 ~ 588909 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagacagacagagagagagagacagaaagagagagagacagaaagagagagagacagaccttGCACATTCCTGATGGTTTCCTCCCGAGCCAAAGTCTGTGTCTGAATATCTCTAACTCTCTCTGTACAGCAGGTGAAAGCAGCTCGCTACAGGAGCAGTGTGTCTGAATTCTCAGTATTTCATAAAACAGTAGGCGAGAAAAACCCTGATGATCTACTGCTTCCGCCGAGATTCTGCAGTATGGAAGCACCAGACGCTGCGCTATCCCATAATGCACCGGGGCTGGCGCGGAAGAGCCATCAGCGTCAAAAACGGCGGCGCATCGGCTCTTTTTAAGCGTCGGTGCTGTCGGTATGAAACGGTGTTCCTTGTGGTTAAACCGTACTTGTGTAACACCACCTGAGTAAACTGTTAAGAAAAAATACAGGTGCTCTGATCTAATCTGGCGAGCTCTTTAAGTTTTAGCCGTTACTATGACAtcgtaggtcacatgacctggtATGTCCAGATCGTATTCATACTACGCACGTGTACTGATCAGTACGCACGGAATCGAATGCCGTGTCACAGTACGTGAGTTCGGACGCAGCCAGAGACGTCTGTAGAGATAACTTCCCTCCATGACCGAGTGTGTGTTCGTCTGGCGcttgttgatgatgtcatccaGCAGAACAGCAGGCTGACGAAAAACACTGTCCTAATTATCAGACTAGCGAACTTATCGCTTTTGCTCTTTCGTTATGTCGCGTGCGCTTCTCCTAGCGAACTCTGAGGAAGGATTGGGACACAGccgaatattattattataataacgtGAGCCGTGCTGAGGGAGCAGTTAGCCTTTAGCACTGCTTTAGCACTCACTGCTAACCAAACCACACACTCCTCACTTCACAGAGTGCATCATGGGTAGTCTTTATCATCTGGACACTACATAccgcagtgcattatgggtaaattCACGACTATTGGAATGATCTCTGATATAAATCGTAGTTTaaagtgaaattttggacacacacacacacacacacgtacacacttaCACGCCTTATAAGGTTAAtttgcaacaacaacaacaacgtcgAGTTTGATCCTGATTTAATCTAAAGCTGTTGTGCTAACGCTCGGAGTGTCCCGGAGAACGTAGCCGAACGTTAGCTATCTACACTACGTTTTATGCCATTGCTTTTCAAACCTTACATCTGTAACATCtgcatttttgtataaaaacaaaacaaaacagctaaGCTGAGATTTTTTTAGCTGTGATGTGCTAAAGATTAGCACATCTTTATAGACCGTTCTTCGAGTTAAagtatattaaacaaaatggttagcattagcaacaGACAATGCTAATGCATTTgacatgctaatgctaacagaGAATGACGGAATGCTAACGGGCGATACTTATTTACTCGACTCTACAATGCTAATCGTGCTAACTGCAAGTTCCACTTTAAATAATCTTTTAACGAAGTGTTTAATTTAACAGAAAACTCTTAAGCAAACTATCCATGACTTCTGTTGTagtgcacaaagtattggcacccctctaccATGTTATTCTCCATACAGTGGTGacactgacgtgtgtgtgtgtgtgtgtgttagaaatgtCGCGGACTGTTTGTTGAGGCTTTGACACTTCTTACTGGTTctcataaatattattttacctcagaaatgcaagtgcatttttattaaatataaagactATAGAGACTATAACACCTGTTAATTACCAGTTAATAAACTTTCTTGTTCATCTACTTCAATTATTTTCACACACGTTTCtcttgtgtacatttttttgataaaatatcctgttaaaatatattttaatgacttaaaataaaaataaacatgagtGTGTTTAAAATTTTCAGCACGATCGCAAAGAGCTctgaatttaatttatatagcgAGACTGTAAAACACAGCGCATTCACCGAAGTTATTAACCGAAAAAATCataaaggattttaaaaaatttagattttaaaaacaaagctcATCATGGATCATCCACACGTAcggacatttttaaaagtgtagatttttctgtgttttggcTTTCTGTACTTTTTTGGGTCGCTAAAAATCAAGCTGTCGGAAAACGTTGATGTCACAGCGTGAACCTGTGCGCTGCGTGTGTTTCGCACGTGTTAGGAACATGCTACGACTGCGTTCATCACGGCTGCTGATCAGGTCGTTACGTTCTgctctgtaatttcttatttaacGTCTTTCTAGGCTACGTccacattatttcattattagacagaaaaactgcattttcgtTTTAAAACGCTTTTCATCTACACTGGCGTTTTCAAACGTTTTCCAAAAACACTTACATCCCTTTACTGCGCATGCGTAAAAAAGCGAAGACGCTTTGGCCTCGCGTCATTTCTGTCAGGCGTTTATTTACGTTCTGTCTGTTTGAATCGAAGCAGCGACGTCGAGGAAAAGCAGCGAGTTTTTAAACGGACTGACGAAGAGCTGAAGAGTTGTATGTgattaaatgtgtttgttttgagttgattgtgtcacatgactaaaaatacatcACTGTTTGTGAACATCTCCGTTTTTCTCCATCCACACGACAACACGCAAACGGCGTTTTTGAAAAGCTCCGTATTCtctggacaaaaaaaacgcCATCTCAGTGGGAACGTAGAGAAAAAGATGCGTTTTCAAATTCCTCCGGATTAACGTGAACACAGCCTTAgtttaatttcactttgtttttgcGGTTCTTCTGGCCCGCTTCTGAGCGAAATCTGAATCGACTCGGCTTcagaagtgaatcaaacatgacGTGGaccaaaaaagagaaaataaacgtTTTAAACTACTTATTTATATAACCATCTAATCGGGCTCTGTGTTCTCTGGTGATTTCTGTTAATTCTTCACACAGGTTTGTTTGGATTGCTCtgttactgtatttataaatacaaataaaagatttttacgAGGACGTCGTCGACAGTACGCATTCCTCAGCCGACCTTTTTGCTGATTTTTGGAGcaattaattatgtaaatttaaaaaaaccaaacaaaccacAAAGCAAAAGAAGCAAAGGAGACGATTTCTCTCCGATTCTGAATCGACAATCGGAATAATCAGCATGAAAGAGCTCTACAGCATTCTCCCGAccgaacataaaaaaaataaataagaaatctCGGACCAATCTTACTCAGAATTCCTGACCTTCAACTACGAAgagttgaataaaaaaataaaaaagcacccCCTAAACTTTTATAATTCCAGCTCAGAAAATCCGGAAGCTCTCCTCAGGCCTGAGTTTAGTgcgtgatgtcaaatcaacatggctgcacgGCGTCATCGGTAAATAAATCACTACTTTTAAACAAGATTATAGTCAGATTTGTTTTAGatcaatccacacacacacacacacgagatgATTCATTAAATCTGTAACGCTGACCAACAGTTAACACTCTAACGTTAGCTTGTTGCTAGTTCTCGAGCGCTTGATGATCAGACAGCAAACAGAAGTCACGCtttcatggaggcgtccatgttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384054 lncRNA upstream 10041 573006 ~ 575138 (+) True G324151
TU384043 lncRNA upstream 28061 552723 ~ 557118 (+) True G324140
TU384045 lncRNA upstream 28660 555797 ~ 556519 (+) True G324142
TU384039 lncRNA upstream 36896 543868 ~ 548283 (+) True G324139
TU384040 lncRNA upstream 36896 543868 ~ 548283 (+) False G324139
TU384059 lncRNA downstream 9501 598410 ~ 599170 (+) True G324156
TU384002 lncRNA downstream 17177 606086 ~ 635045 (+) False G324123
TU384004 lncRNA downstream 17177 606086 ~ 606914 (+) False G324123
TU384011 lncRNA downstream 17177 606086 ~ 606914 (+) False G324123
TU384015 lncRNA downstream 17177 606086 ~ 635045 (+) False G324123
XM_026911132.2 mRNA upstream 61022 505314 ~ 524157 (+) True zgc:162160
XM_034298297.1 mRNA upstream 101881 469956 ~ 483298 (+) True ppox
XM_034298298.1 mRNA upstream 101881 469975 ~ 483298 (+) False ppox
XM_034297821.1 mRNA upstream 118556 460213 ~ 466623 (+) True LOC113524801
XM_034297870.1 mRNA upstream 128200 455576 ~ 456979 (+) False LOC117595771
XM_026911136.2 mRNA downstream 62009 650918 ~ 657392 (+) True etsrp
XM_026911162.2 mRNA downstream 69572 658481 ~ 663976 (+) True pycard
XM_026911161.2 mRNA downstream 69572 658481 ~ 663976 (+) False pycard
XM_026911138.2 mRNA downstream 85959 674868 ~ 680370 (+) True LOC113524791
XM_034297823.1 mRNA downstream 130480 719389 ~ 745520 (+) True gramd1a
TU384046 other upstream 27040 557415 ~ 558139 (+) True G324143
TU383992 other upstream 118554 454910 ~ 466625 (+) True G324120
TU383993 other upstream 118554 454910 ~ 466625 (+) False G324120
TU383942 other upstream 142892 438391 ~ 442287 (+) True G324085
TU383914 other upstream 173070 354781 ~ 412109 (+) True G324067
TU384003 other downstream 17177 606086 ~ 606914 (+) False G324123
TU384064 other downstream 18703 607612 ~ 610009 (+) False G324161
TU384116 other downstream 156764 745673 ~ 748475 (+) True G324206
XR_004576966.1 other downstream 185380 774289 ~ 806528 (+) True psmc4
XR_004576993.1 other downstream 368216 957125 ~ 1010223 (+) False cpne4a

Expression Profile