RNA id: TU384040


Basic Information

Item Value
RNA id TU384040
length 4343
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G324139
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 543868 ~ 548283 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGCAATTAAGCCACTAACCCGAGAAACACCTGCTGCGTCAATGACGTCACTGCTTAATTACATGGCCCCGCCCAACCTGAAGTGAATTGGAGAATGGTCATTATCTCCAGTCCTGGAAGAAGCCTGCTCTTACCTGttcagttcttcttcttcttctacttttaTTTCCCTTCCCTCTTCTCCTCCACCTGCTCAGGTGTCTGACAGAAAACAGGCTCTATGGAGATTTAAACTAATCGCTTCTACACGGTGGAAACGCTGCACTCTGGCGACCTCTGCCGGTCAACCCCCTGTAACTGCATCATTACAAACACCACAAATCCAACTAAATGActtctaaatatattttttatttaaggcTATAGACTGATTTACATCTGATATGAAAATATCTTTAGTGGCATtaagtggactggctatgctaaattgcccctagctgtgtgtgtgtgtgtgtgtgctgcccgGCGACGGACTGGGATGGTATGGCATCCCATCCGGGGTGAGTTCTCCCGTCCCGTGCCCATTATTTCCAGGATAAACTCCAGATCCTCCACCACTCTGTCCAGGATgaatgcttactgaagatgaatgaaggtcTCACAGTGGAGAACAGAAGCAGGATGGGTTCTCCCTGATGAGTTATGGTTTCTTCCAAGggttcctcctcctcctcctcctcctcctcctgagcTCTGACGATGTCTTTACAGCtgcttttcagacaaaataatacaattcttttctctaacacactgacacacacatttccttatCCTTAGAATTGGTGTTAAACTGGAGACACATTAAAACTTCAAGGATGTTGAAGATTTAAAAATCAGGGacccctttttaaaaaaaaaaaaaaagtcctcacctcagatttattttatgcacaTAATCCAACTCTTCATATATTAGACTCattgtttaaatgtattaacataacattttgcccttttttttccttttgaagGTTTCTCATTCAAtaacttttataataattagttgtgatttccactgctgtaacaatttcttttttttttaaatcacaaaccCCAATTTGAGAGCAATGGACTTAAAGCAGAACCTGATGAAGACCTTGTTGATGATGTTCTTGTAAAACCTTCAGTCTTGagcagaagtgtttttttttttttgagttgatGTTCTGATCAGCGttttacacacacttcttaTGTTACTTCTCTAACATCACACGAGACGTTCTCTACATCTCTCAAGCTGCTTTATACAGCTTCACTTTCAATggacaattactgactgtagtccCTCCATCAtgctgcacaaagtattggcacccctctatTCCATCATTTCTAGGAAAACTTCAGTTAGGTTTTCCTTTAAACGGTGCAGGTTTTCGTTCTAACCAATGAGAAGCCACACTTGAAGTTGATAGTCCACATGTTCCCAACTCTGGTCAtggagaaccccctgtcctgcacatttggTGTGTCTTCTTCAACACACCAGATTCAACTAAGCAGCTAATTAACACTcccatgtgtgtgttagagcaggaaaacactTCAGAGGTTCTCCAAGACCAGGCATGGGAACCTGTGGATTATCAGGTGCAgttcctgattggttggaatgGAAACCCGCAGCCACACTGGCACCTTGAGGACAATACCGGAAAATCCCGGGCATCCTTCGATAGAAAGGGAACATCACAGGCACACCACTGATCAGATATAACTTAACTACACTCTTACACCTTGTTGCTCACCTTGTAGATGTTCACTTAGTGACTAAAGCTCACCTTTTTCCCAGTACAGTGTGTTAATCTTCCTCTAACCTTCATCAGAATCAGTTTTACTATCACTGTTACTTaagtcttatatatatacacacatacatatattccAAAGTTGCACTACATTCTGCACAATATTGCACAAATACCTCACCTTTACTGTCTCTACGAAGGATTGCGTAAAATGTGTCCATGAcaaatctgttttaaatttcttttttcttaaacatggttttattttactaattatttatattttattttctactaGATTACAATGTGCAAATTAAGCATTTCACTACTGCGTGCAAACGACTTGAAAGTTCTTCCGtctttctgattggctgttttgTTGATGCACTGCAAAAAgttgacatcttagcaagtgaagatatcttgaatatcgtcaaattcaacaaatatttctctttattggatgtttttttaaacaaataaaagattattaagcctatttctagatgTATTTACTCATTCCAAGCTTACAAATGGTCTTATTTTACTGGTgtatcattttgcttctttgtaCAGATAAACTGAATtcctgagtaaaaaaaatgtctggaaataggctttacatgttttaaaacaatCTGATAAAGAGAAACAATAGTTAAATTTGCCTTGATTCAAGATATTTTAAgttactaaaataaatttttttctattttctatttctgaCCTCAGCAGTAATAATGAggtgtttaattaaaaactcATAAAAACGACACTAAAAACACTGCTGGAGCTGATCCACTCGTTCCTGCAaccccaaccacacacacacacacacacaccatatcAGTGCTGTACTGAAACTAAACCACCATCCAAATCATATCTGCATCATATCAGTGGTGGCCTGTTCACATTATTGGACAGATTCAagggggtgccaatacttttctACAGTTTATGCATTGCGTTTTGATCATGTGATCATTTCCAGCTTGGTGTTCACGTTGTACATGTTTGTTGTTTGCTATCTCAGGAGTGTGTAAGTGTCTTGGACAGGTAGCACATGCCTACCAAGTAATAAACTCTAAAACACCACGAGAGTCAGAAATATTtccacagtgtgtttgtgtgtaaacagAGGAAGTGCTGAAGTGGAGATGATGAAGACGAAGACGAAGACGTCCATCTTCCGAGGTTTCCGAGGTTCCTCTGTTTCACATTAAACCTGGAACATCTGACCAACATCATCATGCTGACATTCTCATCAATCTTTCACACGTGGCAAATTCGTAAgaattttaacacacacatatggcaTTGTTATTATGAAATTCTAtttaagaaattattttattttacctaAATACTGTGGAAAATTCTGTTCCAAACGAAATCTTTCTATAAATGGTATCGTCCTCCATGTTCCTCAAACTCCTTCTCGTCCTTCTCCTTCATATTTGTTCAGAATAAACTCTATTCAGATGGGATTAGTTTTCCACGTAGAGGTGCATAATGTCTTATTATTAATCCTGGGCTTATTAAATTCTTACCACAGGTACAGACTACAGACatgtgatggtcatgtgacctactgaTGATCAAacgtggccacgccccctacagCATGGGCTTATAATAAGGATCAAAAGAATCAGTGTGTATTAAATTGAGATGTGTGAAGTACACGTGGAGTTTTTAGTTAACgtgaagacacgcccatctctgtgatttatacacaCACGCGTCTGGAAAACTAATCCTGTCTGAATAAGGATTAAGAGACATACAAATACAGCAATCCCTATAACTGATAATAATGAACAATTGAAAgctaagccccgcccactgccAAAACGTAAACCCTCGTAACTTTTTGTGTGAATTCTTACGAATTTGCAATCGTGTTCTGAAAGCCACAGTGTGTCCAAGATTGAAATGTCCACAATGTCCTCCATAAGCTACGACGTTAacgtagctaacaagtaacgGAAGCGTaaagccaccagtttagcattgtgcccTAAACGTACATGCACATGTCTGAATCCTCACACACATCCTGAACTATTTTACCATCCGAAACATATGACGAACGTACAAGCTCCACTTtcagactttaggccacgcccccttttcCTGAGTCTGATAATGGAAGAAAGTGATGGAGCTCAGCCTGAACAACACGCTAAAACCCGACCGTGGGAGGATTCACACACTTTAGCACATTTAGCACacgatgctaaactggaggccatACGCAAGGAGACATTGTGCGCATTTCAGCggctttaatgctttaatacTCCATACAGAGCCAGTGTGATGAACTCCTCCACGTGAGATTAGAGGCAACTTTCTCTTTAATAGAGAAACCAAAAAACCGATGATGTGATAATACTTCAGACATGATGTTTCTCATGAAGGGTGGCGTTGAGAAAATACAAAGTAAAGCAGCCGTGTCGGCCGATTACAAGTTTCAACCGCAACAGAAAGGACAGCAGTCATCGTTACTGACGTGAGAGAGAGTTAAGGTAGTTTTGCAGGTCCTGTTGCCTTCAAGGTCGCAGGTTTGAATCCCAGTCGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383986 lncRNA upstream 97743 444777 ~ 446125 (+) True G324116
TU383939 lncRNA upstream 106058 365488 ~ 437810 (+) False G324083
TU383937 lncRNA upstream 106058 436049 ~ 437810 (+) True G324083
TU383950 lncRNA upstream 182803 359123 ~ 361065 (+) True G324089
TU383931 lncRNA upstream 211067 331923 ~ 332801 (+) True G324082
TU384043 lncRNA downstream 4440 552723 ~ 557118 (+) True G324140
TU384045 lncRNA downstream 7514 555797 ~ 556519 (+) True G324142
TU384008 lncRNA downstream 18919 567202 ~ 591598 (+) True G324123
TU384014 lncRNA downstream 18919 567202 ~ 606914 (+) False G324123
TU384054 lncRNA downstream 24723 573006 ~ 575138 (+) True G324151
XM_026911132.2 mRNA upstream 19711 505314 ~ 524157 (+) True zgc:162160
XM_034298297.1 mRNA upstream 60570 469956 ~ 483298 (+) True ppox
XM_034298298.1 mRNA upstream 60570 469975 ~ 483298 (+) False ppox
XM_034297821.1 mRNA upstream 77245 460213 ~ 466623 (+) True LOC113524801
XM_034297870.1 mRNA upstream 86889 455576 ~ 456979 (+) False LOC117595771
XM_026911136.2 mRNA downstream 102635 650918 ~ 657392 (+) True etsrp
XM_026911162.2 mRNA downstream 110198 658481 ~ 663976 (+) True pycard
XM_026911161.2 mRNA downstream 110198 658481 ~ 663976 (+) False pycard
XM_026911138.2 mRNA downstream 126585 674868 ~ 680370 (+) True LOC113524791
XM_034297823.1 mRNA downstream 171106 719389 ~ 745520 (+) True gramd1a
TU383992 other upstream 77243 454910 ~ 466625 (+) True G324120
TU383993 other upstream 77243 454910 ~ 466625 (+) False G324120
TU383942 other upstream 101581 438391 ~ 442287 (+) True G324085
TU383914 other upstream 131759 354781 ~ 412109 (+) True G324067
TU383913 other upstream 222094 315350 ~ 321774 (+) False tbx20
TU384046 other downstream 9132 557415 ~ 558139 (+) True G324143
TU384003 other downstream 57803 606086 ~ 606914 (+) False G324123
TU384064 other downstream 59329 607612 ~ 610009 (+) False G324161
TU384116 other downstream 197390 745673 ~ 748475 (+) True G324206
XR_004576966.1 other downstream 226006 774289 ~ 806528 (+) True psmc4

Expression Profile