RNA id: TU384129


Basic Information

Item Value
RNA id TU384129
length 3333
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id G324216
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 749451 ~ 753443 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tatttatcatagtttcttctttatttatttggcaagcaacattttatatttatacatgaaGTGCATATGTTAGATTGGTGTGTTGAggctgcgagtgtgtgtgtgtgtgtgtgtgtgttagcagccCAACACTCATTTAGTATTAGCATTAAAATCAGTTAACATCATTAAAAGGAGAACATCAACAATCATGCTAACGTTGCTAATAATGAATGACAGGCAGGAAGGGGTTAGCTAGTCACGTTACGTTCGGTTGTACGTTAGCAGTGTTAGCATCGTGCGTGAGGAACTCCTTTAAGTGGTGAGATCGAGAACTTGATTAACATTTTATGTGATATTTATTATGACCGTGAGGAAAAACGTCGGCGTTAATTCATCACCTGCATCATGTGATCACGCTGTAAAAACCTCTTTAGTGAAAAATCAGAAATTAGCGTTTAAAAGATCGGAATCGGTTTCGCTCGGCTACAAAACTCCGTGTTTGTTTAACACTGATAACCAGTTATTGTTACTTACAGCTAGCTTCAGTTAGTCAccttattcatgtttttttttttttacgaaatTTTCCGACAGATATTAGCAAGGTTATGCTTGGTGCCTAGCAACAGCGATCTTACTGTGATCTTTTTCCGGAGCAACACATAGAAATCTAAAATAGCTTCCGTGACAGCCATGATAGCTAGCTGCTAGCTAAACCGTATTTTAACTTTAATCTTTCCCAGGTTTAAGTGCAAACGCTATAAGCAGAAAATCGAAACTGCGTCCACACTAGCGATCGACAAAGGGACAGGTGATCGTTCGTGCGCAGTTTTAGCAACATTTGAACGGATATTTTCTGAATTCTATGCAAATCAGGTCAAGAagagacaaatccaaacgatcgTCTCGAGTGATTCTTCGTACCTGGTCCTACAGCGCGTGCGATCCGATGTTTCTTCGGTTCCCCGCTCACGACTTTaattcctacctgcaattacttttcgcaaaaatggaagaaaaacttataagcGTAGTTTCATCAGAACCTGTCATACACGATTTCTCGTtatcattaaatgtgtttagagacattacaaagaaaaataaagattagAAGGAAGTCATAGAGATCGTTGGTGCTGgtggtgagtgtacgtagctagtacagttagctagtcTGAGAAAGAAGCTAGTTGATTAGCTAGTAGAAGctgattagtgcgttatttagttagctttagatgctatatttttatatagctactactgtttatcattggaattaaaataaaaatgcttgacaggccacacccacaagtgATTGCAGTAGCGTGTCTGATTCGACGGACAGATTTCAAGCGGGAAATTTGTCGTTATTGTAATTACGTGACGTAAAATCAATCCCGAACGAAATCCCGGCAAGGTTTATTTCCGGTTAAGACGCAGGTGAACAGGTTACGATAACTCACGAACTCgttatcagcacatgcctagcGTTACCGTGATGGTGTcacagcgccccctgctggcACAGACACCAAGCGGGTTTAACGTCGTGACGAtcgttttgttgttgttttgtttttttttcttcttcgtACTGGAATGTTTcatgcagaaaaaaaggttCGCATACAAAAATTTACAGACGTGAATAAATTCAGACCTCAGTGTCATGCAGCTTTTCATCAGATTTTACACGGCTAACATTATTAGCATTACATTTTCTACTAACAAATCACACCCCAGTTTATTAGCTTTATGCTAATCGCTAACTACTAGATGCTAGCTGCTCaggatttgtgtttttttgtgctttataATGTCATACAAATCAGAAAATATGATTAAAGGGATCGTTAAACCATGATCAAGGTCAAGCTAACATGGCTAACAATTAATAAAGGCTCATTGTGAATGGTTATGCTAAATGCTAACTTGCTAACTGGCAGTGCTAGCTGTCATTTGTTTTAGCCCGTGAAGCTTTTAGACACAACAGAGATCACTGGACTGAGTTCAGCTACATTAGCATGCATTAGTTAATGATGATAATGCTATTAGCTATTGTGAATTGCTAACTGTGCAGCTTTATGCTAATCGATTAAGAAATCTGAGTAAAAAAAACGATTGTAATTCTACAGTCGCACTAATTGGCAGTGTACGCTTTTGGTTTGTTAGCCGTTTTTAGCTAACGTTTCACACAGTTGAAATATCCCTTTAAGAGGTAACTGGACTGAGGCAGCTGCATTAGCATCAtgttgttagcattagcatttccTGTCACATTCTCTtcattatggtgtgtgtgtgtgtgtgtgtgtgtgacttgctaacatttctgtttgatgttatttagtgtttttgtcatttaatacacacgattgtaattaaataattcttaaaaaataaaaaggctaGCGATTTTTATTCAAGCTAATTCACAAAGGTGATGCCAATTAGTAAGTTGCAGCGTTAGCTTTTGGTCGTCATTAGCCTCGGTTTCAGCCTTTAACATCATGTAGGAGGaggttagctacattagcatcgTGTTGTTAGCATTCAGTCACATTTATACAGATCGTTAACATTTAGGATAACGTTAAAATAACGATAAAATGTTAACGATCGTTAACTCTTTCGTACGCTTGCATATAAATTCCGTGTGTAGAAAGAAAAGAGTTCAGAGACGTATGTACAGCTCGTGTTAATACAATTCTACTGTGTATATGTGACTCATACATTTATTCATGCTGTGCTCTTATaccagatatttatttattttatcttatttgtttgtttgtttgtttgtttgtttgtccgaGCCCCTCCGTGCGTTCAGTCTGTACATCTCTGTACCTCAGTGCACTGTTCAGGGCTCTTCGGTGAAATGAAACGATTCTGCGCAAAAACACACGTCTTCTGCTCGTCCTTTACAGCCTCGGAGGAAGGAGGGGCGGAGTTCAGAAACACAGGTGGAGGTAAACCAGGTGGAGATAAACCAGGTGGAGAAACACAGGTGAAGGTAAACCAGGTGGAGAAACACAGGTGAAGATAAACCAGGTGGAGAAACACAGGTGAAGGTAAACCAGGTGGAGATAAACCAGGTGAAGGTCCTCATCATGGTGAAGTTTCAGAGTTTTTATGGTCCtgtgtgtgtgtgtgtgtgtgttactcggCCACAGCCACGCCGGTGCAGTTGTCTTTACTCTCAGATGTGATGGCTAAATACTCGGCCCTGAGGAGAGAATCAGGATAAAGACGAGTTTATCAGGACGCAAACACGAgccttaaaacacacacagtacatcagaaaattaaataatgtgagtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384105 lncRNA upstream 35650 713395 ~ 713801 (+) True G324197
TU384015 lncRNA upstream 114406 606086 ~ 635045 (+) False G324123
TU384216 lncRNA downstream 557468 1310911 ~ 1315115 (+) True G324284
TU384226 lncRNA downstream 576204 1329647 ~ 1330871 (+) True G324294
TU384239 lncRNA downstream 586085 1339528 ~ 1368639 (+) True G324303
TU384241 lncRNA downstream 587682 1341125 ~ 1342780 (+) True G324305
TU384269 lncRNA downstream 625103 1378546 ~ 1378940 (+) True G324328
XM_034297823.1 mRNA upstream 3931 719389 ~ 745520 (+) True gramd1a
XM_026911138.2 mRNA upstream 69081 674868 ~ 680370 (+) True LOC113524791
XM_026911162.2 mRNA upstream 85475 658481 ~ 663976 (+) True pycard
XM_026911161.2 mRNA upstream 85475 658481 ~ 663976 (+) False pycard
XM_026911136.2 mRNA upstream 92059 650918 ~ 657392 (+) True etsrp
XM_034298115.1 mRNA downstream 20846 774289 ~ 782966 (+) False psmc4
XM_034298117.1 mRNA downstream 53198 806641 ~ 816145 (+) True si:dkey-199f5.8
XM_034297824.1 mRNA downstream 78402 831845 ~ 843562 (+) True cep85
XM_034298120.1 mRNA downstream 104667 858110 ~ 893602 (+) False atp2c1
XM_034298121.1 mRNA downstream 112951 866394 ~ 893602 (+) True atp2c1
TU384116 other upstream 976 745673 ~ 748475 (+) True G324206
TU384064 other upstream 139442 607612 ~ 610009 (+) False G324161
TU384003 other upstream 142537 606086 ~ 606914 (+) False G324123
TU384046 other upstream 191312 557415 ~ 558139 (+) True G324143
TU383993 other upstream 282826 454910 ~ 466625 (+) False G324120
XR_004576966.1 other downstream 20846 774289 ~ 806528 (+) True psmc4
XR_004576993.1 other downstream 203682 957125 ~ 1010223 (+) False cpne4a
TU384187 other downstream 364825 1118268 ~ 1163614 (+) True G324258
TU385279 other downstream 1389063 2142506 ~ 2144511 (+) False bola1
XR_003403389.2 other downstream 1456779 2210222 ~ 2214299 (+) False LOC113533074

Expression Profile