RNA id: TU384216


Basic Information

Item Value
RNA id TU384216
length 4124
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G324284
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1310911 ~ 1315115 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAAAAACCTTTGCCCTGTTAATAAAAATGGAACAGAGTATTTGCTGTACCCTCCTTCCTGAAGTATACAGTGCAACTTTCCAGCATTTGCATACCGACACTGGCCTAAAACATGtgtgactgattttttttaaatagtgggCATGGTAATCTGATTAAGGGTGTATGAAATTTCCAAGCATCTATTTTAGGAAACCCAGTCAGTACCAGGAATggcaaaaattattttcatgacACAGTGCGCAATTGGTTTTACACAAGTATACTACTGTTGTTTGCtcagaaatatgcaaatttagTTAGATGGTCTGACACCACTGGGTTTAATGGGATTTAATTTGTCTCTAGTGAAGTTCCTGaaatttcagtgaaaaacaTCCTGATCTTTTCCAATTCAGACTATTCACATTGAGGTTTCACATTCTTTAGAAGCTGAAAATAAGGGAATGTCTATGGACAAGTGATGTAGAACCTTACTGGTATCTTAGATCTAACTTGAAcaaacatctgttttttttccccaaaacattCGCTAACTTCCCAATTTTTCCAGATTTGGAAATCAAATTCTGAACTTCACCAGACTTTCAGGCCCTGCACATAACCATGTATGTGAAACGTGCAGTCGGTCGGAAGATTGTATCTTGCATATGGTCACATTGCCCATCCTTAATTAACAGCCTTATTTAATCCGCATGCGTTTATCCACTGCACAAAGTAGAGCCTTTAGCACCAGAAAAGTGGACCAGTGCtttttcaatcaaatttttCCTCCACTAGTCCGGTACCAAAGGAGCCAGTACAATGAGTATTTTTGGTACATCAAAAAAGCTCAGGCTTGGCATCAAGATGGCCTTCTGTTTACAGCTAATTGGTCTTGTATCACACAAAAAAGACCAGAACAGTCTGGTTTGTTGTTGGTGCTGCTGTTTCCGATGAAAGACAAGTCGTGGAAATTTAAAACTCCTTCATCTGTGAAACGATACATCAGATATTTAGCTACAGCTGATCTGAACTTCTGAACCAAAGAACCAACATTTAATCACCATGCTGAACTTAACAAGTGCGTTATCGTGGTTGTAATGATGATGCAGTCACTTTAACAGTCACTGTCATTCCTTAAGTTAATGGAGAATGAACCAGAACCACAAGTTTGGTTCCTGTTTTTGAACaggtagtaaaaaaaaaaaaaaaaaaatccatgataTTATAGCCCTAATTTTTGACTGAAAAACTCAAACTTGGAATGGAAGGTGCATTTCACAAATGAACTTTCTAAAGCTTAAATGCTAAACATACATGAAGGATGCTTTCACACTTGGAGTTTTTTCTCAACAACCAGCGCACATTTTACCAAAACAAAAAGGCATGCGGAATTCATGGATGCAGATAgaataatttgttaataatttaattatgattttagaattttttttttttttggccatagCAAAGCTTGTAAAATTGAAAAAGATTTAACATTTCAGAAAAGTTCATTGACatcaagtgtgaaagcagcctaacCCTACTTAATGGAACACACACTTCGAAACACACCGTCTCGCATTTCTTTAgagctcatcatcatcatcaccatcatcatcatcatcatcatctctaatAACCCCAGTATCTGTGCTACTGTCATTCTCAACTcatctaaaaacacacaaaagaaagaaatatggatAAAAACATCATTCACATTTCTACCAAACAAACTACACAGCTTTGGAAACTAactgcacccacacacacacacacacacacacacacacacacacacacacgcacaaactaAATCTCTCCACGCAGCAACACACcttaatatttacattcatattgCTAATAATTTAACATATCTGTGCTGTTTTGTGCGTTTCTACTCAGCTTTAAGGGTGTGAATGCAGTGCATGTTGCAGAGTCAGGTTTAAGTAAAATGACATCAAAATTACAATTTGGTCGAACGTCGAAATTTGAAAGGAggctttaaaaaattattcgttgagaaaaaaaaacacattgattACACGAAGCATTTCCTGGTGACGCTGACTTTCTTCTCTATGCGTAGTGTTTTTTAAAGGAACCGTCTGTGATTATCTGCTTTAACTCCAGGGTAGACATTCAGgtgtaaaaaagtaaataaataaaaggacaaAACTGTTaagaaaatacttaaaaaaaaaaataaaaaattccactCGTTCTATgatatgtacagaaaaaaaggaaaaatgtaggTCAAGCATGTCAAGCATATAAAATACTTCTCAGCATTATTACGAGTCTAAGCTGTTCTCATGGTTTATGACAGGACTACACTTCATCTTTAGCGTAATCAAACCTGGGCTGTGGCGAGAAGGTCGGGTTCGATCCTCCTGTAGAGCTCACATTGGTAATATCGTATCGTGATGTACGATgtaactgattatcagcacatcCCTAAGCTCTGACTGCGGTGCGAGCTGCTCGTGGAGTTGCATTtctacaacaaacaaataaaaacattttaaaaatgtttaaAATGAAGCTGATGCGCTAAGAACCGAAGGTGTGAACTGATAATGAGTTAAACGACGTACTGTTGACAGGAGACTACTCTTTCTCTACTGAGTTAAAGTCAATTcttttttagaaaacaaaacGTGGGGCGGATAAATCGGGTTACGAATCCGGGCTTTCAGGTCATAGTAGGTGCGTAACGATCGGACGATTTTAAAGACAACGACCGAAATGAATCAATGCAACaattttaatctgattattatcAGAAAAGGGACAAACAACTggtgtgtataaaataataaaatagtccttctctttGTCATCATTTGCCAATTAGCTGTAAATTTCATCACACGTCGACCGGAGGCTACTAAATCGAATCgtattgtatcatatcgtagcagattcagtggaaTCGTCAAAAATATCGGATCATTGTATTAAGAATCGGAATAATATCATATCTCGTGttgaagcctgaggtttacacccctAATGTATGATCATCAGTTCAGTAGTAGTGCTGTCATTTCTCTCCCGTCCAACCAActggagaaagaaaaactcaTTTCACAATTAAAGAAAGCAGACCCTCACTGTCCAAATGAatactattatataattaaagtttaaattagTCAGCGCCTTTTATACATTAAAGATCTGACAATAATAAATGAGAGTTTAGCATTTTCGTACAAACGGTTAGAATTTATCACTAAtaaataatggatttttttaaatattaaaaagtgacACGTCTCCCTCAACACTCGCTCAACACACCTCCTTTACAGGTTCATCTAATTACAGTAAGCCTTAGGAACaattctttctctcactcacacacacacacacacacacacacacacacacacacactcatcagcaGTTATTCTCCATGTAAACGTCTACATCTcgctcttaaacacacacacacacagctctctttCTTCAGGCAGCGATGCTCAGCGTCCCGTTCACCCCGCGTGTAAAAAATACATTgcgatttgatttttttttttgagtctttttctagcaaaaaatataaaaaaagctcTTAAGGTCCAGTCttcctttagaaaaaaaaagcaagaactcacacatacacacacaaatgtcatGCCCTATTTCTGTCCCactactggcatgttattaaaaaaaaaatccccaggGCTTTAaaactctctcactctctctctctctctctctctctcattctctcatctTTCAAatcattgtgtatttttatttgtacacaATTTCTGTCCAAACCTGCACTTCCTGCTTTTCCtgaaagaaacaggaagtaaaagcCCAAGCAGAGACGACAgtccatcacatcacacacacacacttctaaacttctgtgtgtgtgtgtgtgtttagtccaGCTTCTCCAGTACAGAGGGCACATAGACGAGGCTGAGCTCGCTGCCAAAGTCACACACGATGGCGGCGTTTTCCAGCACGAGGAGCTGCCGCACGTGCTGCCCCTCGCTGTTCTGACCCAGATACACCGTCTGCAGCAGGTCCCCGTAGTTCAGGTCCCAGAACGACACGCAGCCGTTACCTCCGGTCACTAATAAACTCTCGGAAATCACTGCCAGACTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384127 lncRNA upstream 557468 749451 ~ 753443 (+) True G324216
TU384129 lncRNA upstream 557468 749451 ~ 753443 (+) False G324216
TU384105 lncRNA upstream 597110 713395 ~ 713801 (+) True G324197
TU384015 lncRNA upstream 675866 606086 ~ 635045 (+) False G324123
TU384226 lncRNA downstream 14532 1329647 ~ 1330871 (+) True G324294
TU384239 lncRNA downstream 24413 1339528 ~ 1368639 (+) True G324303
TU384241 lncRNA downstream 26010 1341125 ~ 1342780 (+) True G324305
TU384269 lncRNA downstream 63431 1378546 ~ 1378940 (+) True G324328
TU384305 lncRNA downstream 113681 1428796 ~ 1429158 (+) True G324360
XM_026924349.2 mRNA upstream 197 1296876 ~ 1310714 (+) True ptpn23a
XM_034298042.1 mRNA upstream 123550 1185520 ~ 1187361 (+) True LOC113541446
XM_034298040.1 mRNA upstream 143953 1138279 ~ 1166958 (+) True LOC117595784
XM_034298039.1 mRNA upstream 186730 1103739 ~ 1124181 (+) False LOC113525078
XM_034298038.1 mRNA upstream 186730 1118262 ~ 1124181 (+) True LOC113525078
XM_034297827.1 mRNA downstream 166784 1481899 ~ 1484529 (+) False si:ch211-269k10.4
XM_034297830.1 mRNA downstream 166794 1481909 ~ 1484529 (+) False si:ch211-269k10.4
XM_034297831.1 mRNA downstream 166797 1481912 ~ 1484529 (+) False si:ch211-269k10.4
XM_034297829.1 mRNA downstream 166798 1481913 ~ 1484529 (+) True si:ch211-269k10.4
XM_034298234.1 mRNA downstream 393317 1708432 ~ 1713392 (+) True LOC113532957
TU384187 other upstream 147297 1118268 ~ 1163614 (+) True G324258
XR_004576993.1 other upstream 300688 957125 ~ 1010223 (+) False cpne4a
XR_004576966.1 other upstream 504383 774289 ~ 806528 (+) True psmc4
TU384116 other upstream 562436 745673 ~ 748475 (+) True G324206
TU384064 other upstream 700902 607612 ~ 610009 (+) False G324161
TU385279 other downstream 827391 2142506 ~ 2144511 (+) False bola1
XR_003403389.2 other downstream 895107 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other downstream 895107 2210222 ~ 2214261 (+) False LOC113533074
TU385671 other downstream 1250585 2565700 ~ 2569739 (+) False G325435
TU386582 other downstream 2696295 4011410 ~ 4013538 (+) False hamp

Expression Profile