RNA id: TU384266


Basic Information

Item Value
RNA id TU384266
length 2829
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G324326
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1456477 ~ 1459325 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGGTAGAAGTTGTTTTAATCGGAAACGCAGTGACTCTCCAAATAATCACATACAAATCTACAtcattacacaattacacacagctgtgtggAAATCCTGTACAAACATTTAGAAGATATTAGGAAGTTATTAGGATTATTGAAATGTGCAGGAAGCTTGTGCACGAAATGTGTAGAGCTTTTTTTCCCCGCTTTCTACTCCGTCAAAGTGGGATTGTGCTGCGTGCCTTGGCGATGATGGCGAAGGATGGAGGATGAACGTGTCAAAATAGTGCATTCTGATCTGAAATAAAAGTGAACGagccaaaaaaaggaaaaaaaaaactgtacactTACTGGCTTAAATTCAAGAACTGAGTGGTAAATATTTACCAGTTATCGTTGGTAAGTTATCATCAGTACACCCAGAGACCGATCAGCGTTTACAGAGAGAAGATCTTAAGCAAACTCGACTCATGGATGTAATTTTAAAATCCTATAAAGCTGCCTTGCTAATTAGTGTCACATATCCACCACTAGATAACGTTAATTATTATAATGcgtaattaattaaattaaacgcTAACGCTCACGTTTTGTGGATCAGCTGATCAAATTTAATTTACGTCGTagtgatgtcttttttttaacgcGAACGATTCGGCTCTTTGAATCGACTCGCCCTGTAGAGTAACGTTATTTGGTTAATTAGAAGGCAGAGTAgtattttatgaaattatttcAGCCACAGTTACGCAAAAGAACAATCAGCGGTATCGTAAACATCGTAAACTTCGTCTGGTCCGAACGATTCGTTTGGGCgccgaaagagtcgactcttacgGGTGAGCTGAATCAAATAATATGATTCACTAAACGCTCATCACTCCATCTATGTGTCTTCTCATAACCTAGTTCAAAAATACaggaatattattttCAAGATCACGTGTATTACACTCGAATAAGGCAGTGTCCTCTCATAATATCATGAACTGTTCTAAATTTATCGTATCGtgatatgaaattttaatatcaGCATATTCCTACATGTGTAAACATCTTTGGACAAAGTGTACGAGtgttcttttataaaaaaaaaaaaaaaaaggcaagtgtgtgtgctgatattAAATGTTCATATCATTATAACTGAATCACAATTTACAATAATAGGAatttgttccaaaaaaaaaaaagaaaattaagatGGCCGTCCTTACTCTAAGGAGCGTCTGTCTGAACGTGGCACGTGGGGTAACGACGATAATTTAGTGTTCATGATATCGACATACTGTGTgttaatgtatattattatatgtataatgGCACGTTTGGTGTAGTGCGTAAACTCATGACGGATTCGGAGCGCGGCGGGAAGATTGTCGTCAGGGACGTCGCGTGcaagaagaaatgaaaatccaaataaaatagGAATGATCTACTAAACActctgaaatcacacacatcatcaatGCCTCGTTAACAacaatatacacactgtatatatgtatatatatatatgtaatggaGTATTATAAGGCTAGATGTCAgttatgaaacacacacacacacacacacacacacagagacacacacacacacactcatgcaggCACATCTGTGTGTTAGAGGCTTCAAGAATGAACAGAAACGTGGATACTGGCTTCGGTGGTCTGGAGGTAATGGATACAAGTTAGCAGCgatcttcatcatcctcatcctcatcatcctcatcatcatcatcatctttctcATCATCAAACATAAAAGTAGAACCAAAGTGGCCCAATCATTCTATGATGCTAAAACAAAGTGCTTGAACCGTGTGCTCTTCTTGAGGCATGTGCCGATAATCAGACATACGATAGAACCCTGATATTTAATCTTtcgatattattattattattattaatatcatgtgaaatacttgtcttttttttttaatgaagaaggTTAAAAGCGTAGACAATAATCCGTCCCAGCCGTAAGGCAGCGTGAGGATGGAATTTTTACACTGAACAAATctgatgcaaaaatatttttagcgGAACGTATCGGTGCCGAACTTACAAACTtagctgaattttatttttttttaaagctaacaGCTAAAAAAGTACTAGAAATCTACCTTTACCCAGCATCAGCTGTAGTTCAGGACACACTGCGACTTCCTGTCATCTATAAACACGAACGAAACTTTATCTACATGGAATGTTATGAAGACGGGCAATTCCGtatagccccgcccctttccccTAGGCTCCGCCTCCTAATATTTAAGGATTGTCCTGGATGTGAATATGGATTATAATAATAAGGTTTTGGAGTTAATGATGTTTGGACGTGTGTTGCTATGTGTGATATTAGCGTAAACGGTgataaattgtttgtttttaatcgcATGGATCGTATGGAAATGCGAATATATATCGGCACACACCACTCCTACGCGCGTCTGTTGCTATCGACGACACGGGAAACACAGAGACAATACTGCAgtggggacaaaaaaaaaaaacacatctaagAGTTTCTCcagtgaacatgaacatgaacctCAGTGCTCAGTTTTTCACCTCGTCACGTCTGTAGCGCCACCTAGTGGCTCAACACTGACCAAACCCGGGACCAAAGACACGGCCGTCTCGTCCTGATATCCCCTCCGACGCCTGGAGCCCTGTTTGTGCAAAAGGTTGACTTTCTCTCCCCTCATCCTTCTCTTCATCGTTCCTCGGTTCCTGCAGGAGCGAGTGTGGAGAGGTTCTTTATTTCTCCACTCCGTTGATGGGTTTGTTGTTTCCGGATCCTTTCCCTCTCCTCCTGGTGGTGGGAGGCGCCGCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384305 lncRNA upstream 27319 1428796 ~ 1429158 (+) True G324360
TU384269 lncRNA upstream 77537 1378546 ~ 1378940 (+) True G324328
TU384239 lncRNA upstream 87838 1339528 ~ 1368639 (+) True G324303
TU384241 lncRNA upstream 113697 1341125 ~ 1342780 (+) True G324305
TU384226 lncRNA upstream 125606 1329647 ~ 1330871 (+) True G324294
TU384331 lncRNA downstream 2214 1461539 ~ 1463187 (+) True G324382
TU384895 lncRNA downstream 133158 1592483 ~ 1619873 (+) False G324799
TU384893 lncRNA downstream 134153 1593478 ~ 1612170 (+) False G324799
TU384897 lncRNA downstream 134153 1593478 ~ 1597429 (+) True G324799
TU384929 lncRNA downstream 190712 1650037 ~ 1650765 (+) False G324830
XM_026924349.2 mRNA upstream 145763 1296876 ~ 1310714 (+) True ptpn23a
XM_034298042.1 mRNA upstream 269116 1185520 ~ 1187361 (+) True LOC113541446
XM_034298040.1 mRNA upstream 289519 1138279 ~ 1166958 (+) True LOC117595784
XM_034298039.1 mRNA upstream 332296 1103739 ~ 1124181 (+) False LOC113525078
XM_034297827.1 mRNA downstream 22574 1481899 ~ 1484529 (+) False si:ch211-269k10.4
XM_034297830.1 mRNA downstream 22584 1481909 ~ 1484529 (+) False si:ch211-269k10.4
XM_034297831.1 mRNA downstream 22587 1481912 ~ 1484529 (+) False si:ch211-269k10.4
XM_034297829.1 mRNA downstream 22588 1481913 ~ 1484529 (+) True si:ch211-269k10.4
XM_034298234.1 mRNA downstream 249107 1708432 ~ 1713392 (+) True LOC113532957
TU384187 other upstream 292863 1118268 ~ 1163614 (+) True G324258
XR_004576993.1 other upstream 446254 957125 ~ 1010223 (+) False cpne4a
XR_004576966.1 other upstream 649949 774289 ~ 806528 (+) True psmc4
TU384116 other upstream 708002 745673 ~ 748475 (+) True G324206
TU384064 other upstream 846468 607612 ~ 610009 (+) False G324161
TU385279 other downstream 683181 2142506 ~ 2144511 (+) False bola1
XR_003403389.2 other downstream 750897 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other downstream 750897 2210222 ~ 2214261 (+) False LOC113533074
TU385671 other downstream 1106375 2565700 ~ 2569739 (+) False G325435
TU386582 other downstream 2552085 4011410 ~ 4013538 (+) False hamp

Expression Profile