RNA id: TU384331


Basic Information

Item Value
RNA id TU384331
length 1517
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G324382
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1461539 ~ 1463187 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACTGTTTGTAAAACCACCGTTAGTGAGTCAGTCAAAGAGTCAATCAGTGAGCAAGTCAGTGAGTCGGTGAGATAAGTCATCCATCTCACTTGGTCAATGAATCAGGAAGTCAGTCATtgagtcagtgagtcatttAGTCAGCAAGTGAATCAGTCAGCAAGTGAATCAGCTGGACAGGTCACTCAGTGAGTAAATGAGTCAGTGGGTCAGAGAGTCAGTTTGTCAGTCAGGCTTTTGATTGGTCAGTCAGTCAATAGGTCACTTGGTGAGTGAGTCAGTTGGTCAGAGATTCAGCCAGTAAGTCATTTAGTCAGGTGGTCAGCCAATGTGTCAGAGAGTCAGCCTGTCAGTTAGTCATTACGTCAGTGAGTCAGTTAGTGAGTCAGACtgtcagtaagtcagtcagtgagtcagcctgtcagtaagtcagtcagtgagtcagtgagacagttaaTCATTCAGTCAGTGAGTTAGTCAGTGAATCAGCTTGTCAGTGAGTCAATCTGTCACTTAGTCAGTGAGTCAGCCTTTCAGAGAGTCAGACTGTCagagagtcagtcagtgagtcagtcagagagTCAGACTGTCagagagtcagtcagtgagtcagtcagtgagtcagacTGTCAGTGAGTCTTTCAATCAGGGactcagtcagtgagtcagccTTTCAGAGAGTCAGACTGTCagagagtcagtcagtgagtcagtcagtgagtgagttagtGGGTAAAACAGCTCCTTGTAGGCGGGTTCACTTGGTGGTTCAGTAAAAACACTGTATGACGACACGTCAGAAATGAGACAGGGAAACCAGGCTTGCACCCACAGTAGTGCCACAGTGCCGAGGAtggtcttctgtttttttttgtttttttttgcaaaactgcATCCAAATACAGTATAccatcatttgtttaaaaatttctAAATAGTTCCTAATACTGACCCAACTTTATAACTCAACCTCGGAGCAAGCAAAGCCATCAACACTCTTCATCCTCAGGCAGCCTAAATTTTAGTAAACGACAGCCAAGAATGAGTCCGTTCAAATGACGAATTATAAAATGTCTAACCGTGTGTGAGCCTGAAACGTTCAGAAACATTCAGGGCTTGTGTTTCATGCTGCTGTTTCCATGAGCATTAAACCACTGAGGCTACAGAAGCGGAGAGCAACCTTCATCAGTTAACATCTTCTACAGCTCACAGCTACGCTCTGCACCCACCCAACCACAAGCCACAATGTTAActggtaatcacacacacacacacacacacacacacacacacacacacacacacacacacacacagagagagacgagCACCCTCACTAACACGCCACACCATGTTTCTTATCCGTTTACTAATCAGTCGAGGGCCAGTGGGAAGGAAAACATGAAAAGATGAATGACACAGAAACAAGTATTTCAGCTTGATGTAACTAATAAAGAGATGTAAAgcgtacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384266 lncRNA upstream 2214 1456477 ~ 1459325 (+) True G324326
TU384305 lncRNA upstream 32381 1428796 ~ 1429158 (+) True G324360
TU384269 lncRNA upstream 82599 1378546 ~ 1378940 (+) True G324328
TU384239 lncRNA upstream 92900 1339528 ~ 1368639 (+) True G324303
TU384241 lncRNA upstream 118759 1341125 ~ 1342780 (+) True G324305
TU384895 lncRNA downstream 129296 1592483 ~ 1619873 (+) False G324799
TU384893 lncRNA downstream 130291 1593478 ~ 1612170 (+) False G324799
TU384897 lncRNA downstream 130291 1593478 ~ 1597429 (+) True G324799
TU384929 lncRNA downstream 186850 1650037 ~ 1650765 (+) False G324830
TU384931 lncRNA downstream 186850 1650037 ~ 1650938 (+) True G324830
XM_026924349.2 mRNA upstream 150825 1296876 ~ 1310714 (+) True ptpn23a
XM_034298042.1 mRNA upstream 274178 1185520 ~ 1187361 (+) True LOC113541446
XM_034298040.1 mRNA upstream 294581 1138279 ~ 1166958 (+) True LOC117595784
XM_034298039.1 mRNA upstream 337358 1103739 ~ 1124181 (+) False LOC113525078
XM_034297827.1 mRNA downstream 18712 1481899 ~ 1484529 (+) False si:ch211-269k10.4
XM_034297830.1 mRNA downstream 18722 1481909 ~ 1484529 (+) False si:ch211-269k10.4
XM_034297831.1 mRNA downstream 18725 1481912 ~ 1484529 (+) False si:ch211-269k10.4
XM_034297829.1 mRNA downstream 18726 1481913 ~ 1484529 (+) True si:ch211-269k10.4
XM_034298234.1 mRNA downstream 245245 1708432 ~ 1713392 (+) True LOC113532957
TU384187 other upstream 297925 1118268 ~ 1163614 (+) True G324258
XR_004576993.1 other upstream 451316 957125 ~ 1010223 (+) False cpne4a
XR_004576966.1 other upstream 655011 774289 ~ 806528 (+) True psmc4
TU384116 other upstream 713064 745673 ~ 748475 (+) True G324206
TU384064 other upstream 851530 607612 ~ 610009 (+) False G324161
TU385279 other downstream 679319 2142506 ~ 2144511 (+) False bola1
XR_003403389.2 other downstream 747035 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other downstream 747035 2210222 ~ 2214261 (+) False LOC113533074
TU385671 other downstream 1102513 2565700 ~ 2569739 (+) False G325435
TU386582 other downstream 2548223 4011410 ~ 4013538 (+) False hamp

Expression Profile