RNA id: XM_034298130.1


Basic Information

Item Value
RNA id XM_034298130.1
length 1809
RNA type mRNA
GC content 0.55
exon number 8
gene id herpud2
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 234506 ~ 331761 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctctctctctctctctgtctctctctctctctctcgcagtctctctctgtctctctctctctctctctctctctctctctctctctagtaaAATGCTGTGATGTTGGACAGTGAGACTGGAAGCTGCTGTTGGGACGCGACCCGGAGAGATGTTTTCCTCCCCACAGCACTCGTCCTGTCAGTGTGATGACTGAGACTCGTGGACGCTGAGCGAGCAGaaggtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtatgtgtgtgtatgtgtgtgttctgagctTCGATTAGTATGAAACATGGAGGAACACGGAGCTGACAGTCCCATCACCCTGATCATCCGCGCGCCAAACCAGAAATATGACGACCAGCCAATCAGCTGCTTCCTCGACTGGACtgtggagaaactgaagaaacaCATCTCTAAAGTTTATCCCAGCAAaccaTTGTCCCGAGAGCAGCGGCTGGTTTACTCCGGACGTCTTCTACAGGATCACCAGCAGCTCCGGGACGTGCTCCGAAAGCAGGACGAGTATCACATGGTCCACCTGGTGTGCGCACCCCGGAGTCCCCCAGCTGACCCCTGTGACCCCTccgtgacctctgaccctgaCTCTGCAAATGCAGCCTCTGCTGACCCCGCCCCCTCCGCCTCTCCATCCAATCAGAACGTCCCAGACCCCTCTCTCACAGGAAGTACAGACGGCGTTCGACACCGAGGAGGATCTGCTCACGCTCACCAGCGacctGAGGGAGCCGTGTTTCCTGcagcgccccctgctgcacTTCCTCCTCACAGCGTGtacacacctgtacaggtgATGTGGTGGCAGCGTGTGTATGCGCAGCATTACTACATGCACTATCAGGCTGCGATGGCCGCCGCTCAGGCCCCGCCCCCTCCGGTTAATCCTGGCCCTTCGGTCACTCCGGCTCCGGCCCCGGTTCCAGTTAACCCCGCCCCACTGGAGCAACCGGCGAATCAGAACCCTCAGATGAACGCGCAGGGCGGGGCCGTGCAGAACGAGGACGAGCTGAACCGTGATTGGCTGGACTGGCTGTACACGGTGTCGCGCGCCGCCGTCCTCCTCAGCATCGTCTATTTCTATTCGTCCTTCAGTCGCTTCGTCATGGTGATCGGCGCCATGCTGCTCGTCTACCTgcaccaGGCGGGATGGTTCCCCTTCAGGGTGGAGCTGCAGAACCCTGGAGCAGCAGAGCGACCCCCAGCGGAGAACGACAGAAACCACAACATGCAGGAAATGgagCGCATTATGGATGATGGTCttgaggatgatgatggtgacaGTGGTGATGAAGGCTCTGATGAAGCCGCTCCTCCTCAGCCGAGCTTCCTCACGTCCACGTGGTCCTTCATCAGCACCTTCTTCACCTCGCTGGTTCCTGAGGGTCCTCCTCGCGGCGCTagataaacaccacacacacacacacacacatgcacacagtgaaCTTTGACCCCTTACAGAAGAAATAAACCCACAAACAGCAGCGTGGTGGTCGACGTCTGGCCTGATTCTGCTGAACGAGTGCTGCTCAAGTTTCTCATCTCCGCCGCTGTTGGGTTCTTCATCAGGCGAGAGGAACGAGTGGAAGGTTCCTGTGTTCTTCTTTCCCATCTCATcataagaactttttttttaacaaaacagaaGACTTGTGTAACTGCTTCAGTTCTCCACTTTCTTTCATTGTATGTAAATAAGTATGGCgtatttacagatttaaataTTTGCATCTCATTGATCTGAAGTGTGTTTTTGATTAAACTGATGAAACAGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384490 lncRNA downstream 5077 297235 ~ 321868 (-) True G324498
TU384511 lncRNA downstream 7942 315399 ~ 319003 (-) True G324504
TU384471 lncRNA downstream 77230 247960 ~ 249715 (-) True G324488
TU384460 lncRNA downstream 102032 224118 ~ 224913 (-) True G324482
TU384459 lncRNA downstream 107895 218778 ~ 219050 (-) True G324481
TU384525 lncRNA upstream 22906 353989 ~ 354632 (-) True G324516
TU384521 lncRNA upstream 43116 374199 ~ 443951 (-) False smarcc1a
TU384573 lncRNA upstream 238506 569589 ~ 570151 (-) True G324544
TU384486 lncRNA upstream 239200 570283 ~ 575149 (-) False dyrk1b
TU384574 lncRNA upstream 251809 582892 ~ 583557 (-) True G324545
XM_034297977.1 mRNA downstream 115476 205263 ~ 211469 (-) False LOC113523705
XM_034297978.1 mRNA downstream 117944 205263 ~ 209001 (-) True LOC113523705
XM_034297976.1 mRNA downstream 123208 194648 ~ 203737 (-) False azi2
XM_034297975.1 mRNA downstream 123209 194648 ~ 203736 (-) True azi2
XM_026909661.2 mRNA downstream 168366 148605 ~ 158579 (-) True eomesb
XM_034298019.1 mRNA upstream 20804 351887 ~ 396573 (-) True slc4a7
XM_034297797.1 mRNA upstream 65949 397032 ~ 400945 (-) False pkdc
XM_026911134.2 mRNA upstream 65949 397032 ~ 400930 (-) True pkdc
XM_034298287.1 mRNA upstream 73021 404104 ~ 428410 (-) False cspg5a
XM_026911151.2 mRNA upstream 73021 404104 ~ 428409 (-) False cspg5a
TU384497 other upstream 19655 350738 ~ 356621 (-) False slc4a7
TU384506 other upstream 19655 350738 ~ 356621 (-) False slc4a7
TU384611 other upstream 395544 726627 ~ 727634 (-) True G324579
XR_004576952.1 other upstream 716500 1047583 ~ 1102117 (-) True nek11
TU384829 other upstream 1039393 1370476 ~ 1371029 (-) True G324748

Expression Profile